View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12402_high_5 (Length: 262)
Name: NF12402_high_5
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 19342963 - 19342727
Alignment:
| Q |
19 |
gaacctaaatgataaaataaagaatatgtatgaagataaggtatgcttatattttccaattgatttcctacataacatcaattctctatttgtttatttn |
118 |
Q |
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| T |
19342963 |
gaacctaaatgataaaataaagaatatgtatgaagataaggtatgcttatattttccaattgatttcctacataacatcaattctctatttgtttattta |
19342864 |
T |
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| Q |
119 |
nnnnnngtaaaataatcaattctccattttcttaatatttgattattggcttatcacttaatatttgattaacaggttgcattttgtgaatttgaacatt |
218 |
Q |
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| T |
19342863 |
aaaaaaataaaataatcaattctccattttcttaatatttgattattggcttatcacttaatatttgattaacaggttgcattttgtgaatttgaacatt |
19342764 |
T |
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| Q |
219 |
taacattgtctgaattccctgaactgaaggatctgtg |
255 |
Q |
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| T |
19342763 |
taagattgtctgaattccctgaactgaaggatctgtg |
19342727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 19334938 - 19334840
Alignment:
| Q |
19 |
gaacctaaatgataaaataaagaatatgtatgaagataaggtatgcttatattttccaattgatttcctacataacatcaattctctatttgtttattt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
19334938 |
gaacctaaatgataaaataaagaatatgtatgaagataaggtatgcttatattttccaattgatttcctacgtaacatcaattctctatttgtttattt |
19334840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 160 - 255
Target Start/End: Complemental strand, 19334245 - 19334150
Alignment:
| Q |
160 |
attattggcttatcacttaatatttgattaacaggttgcattttgtgaatttgaacatttaacattgtctgaattccctgaactgaaggatctgtg |
255 |
Q |
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| T |
19334245 |
attattgacttaccacttaatatttgatttacaggttgcattttgtgaatttgaacatttaacattgtctgaattccctgaactgaaggatctgtg |
19334150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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