View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12402_low_1 (Length: 454)
Name: NF12402_low_1
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 11 - 336
Target Start/End: Complemental strand, 1396542 - 1396224
Alignment:
| Q |
11 |
cagagatgatttcaaagaggatcaaatttgcctttatagctctaatattaccccaatttttctcgcccaaaaggagtgtattatctgcaaaatataagtg |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1396542 |
cagagatgatttcaaagaggataaaatttgccttta--gctctaaaattaccccaatttttctcgcccaaaaggagtgtattatatgcaaaatataagtg |
1396445 |
T |
|
| Q |
111 |
ggaaatcctaaaaatggaaaatgtccccacattatacccagaaaatggaaagtcaagtctaaggagcaagctgatattgccatcaccacttgggtcgtgc |
210 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1396444 |
ggaaatcctaataatggaaaatgtccccacattatacccagaaaatggaaagtc-----taaggagcaagctgatattgccatcaccacttgggtcgtgc |
1396350 |
T |
|
| Q |
211 |
atcttcttgtcgaaacaaacagtgcacgaaatcacctcatcatctttcggatggctaacaaaaatattgtctagaaactgagactgtaaactcatttcaa |
310 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1396349 |
atcttcttgtcgaaacaaacattgcacgaaatcacctcatcatctttcggatggcccacaaaaatattgtctagaaactgagactgtaaactcatctcaa |
1396250 |
T |
|
| Q |
311 |
ctaattaggggcacgaaccattactg |
336 |
Q |
| |
|
|||||||||| || |||||||||||| |
|
|
| T |
1396249 |
ctaattagggtcaggaaccattactg |
1396224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 382 - 439
Target Start/End: Complemental strand, 1396209 - 1396152
Alignment:
| Q |
382 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaataaatt |
439 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1396209 |
gaaagtgcattttccttcacaataaacttacttgggacacttcctatatcaagaaatt |
1396152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 129
Target Start/End: Original strand, 17352686 - 17352784
Alignment:
| Q |
31 |
atcaaatttgcctttatagctctaatattaccccaatttttctcgcccaaaaggagtgtattatctgcaaaatataagtgggaaatcctaaaaatggaa |
129 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| ||| | |||||||| ||||||||||||||| ||| |||| | || ||||||||||| ||||||||| |
|
|
| T |
17352686 |
atcaaattcgcctttatagctctagtattaaccccaattttctcggccaaaaggagtgtatcatccacaaattgtaggtgggaaatccagaaaatggaa |
17352784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University