View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12402_low_11 (Length: 234)
Name: NF12402_low_11
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 219
Target Start/End: Complemental strand, 4028114 - 4027912
Alignment:
| Q |
17 |
aaataatggtgacattaatannnnnnnaataatatacagatctaatgctctgtgggagtgtgaatgtgtattagttcacactttaaactgcaaggtcaat |
116 |
Q |
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| T |
4028114 |
aaataatggtgacattaatatttttttaataatatacagatctaatgctctgtgggagtgtgaatgtgtattagttcacactttaaactgcaaggtcaat |
4028015 |
T |
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| Q |
117 |
gacattcatatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttct |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4028014 |
gacattcatatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttcttcaggctatggccattaattttgctttct |
4027915 |
T |
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| Q |
217 |
gtg |
219 |
Q |
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||| |
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| T |
4027914 |
gtg |
4027912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 4216055 - 4215913
Alignment:
| Q |
76 |
gtgaatgtgtattagttcacactttaaactgcaaggtcaatgacatt--------catatgagtgaaagtcgaatcagatctctagcagccaaagcattc |
167 |
Q |
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| T |
4216055 |
gtgaatgtgtacgagttcacacttttaaatgcaaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatctctagcggccaaagcattg |
4215956 |
T |
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| Q |
168 |
aaggtcagtaattgctttcttcaggctatggccattaattttg |
210 |
Q |
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| T |
4215955 |
aagttccgttatagctttcttatggctatcaccattacttttg |
4215913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 3950879 - 3950935
Alignment:
| Q |
132 |
gaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctttctt |
188 |
Q |
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| T |
3950879 |
gaaagttgaatcagatctctagcagccaaaacattgaaggtcagaaattgctttctt |
3950935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 76 - 188
Target Start/End: Complemental strand, 3796931 - 3796811
Alignment:
| Q |
76 |
gtgaatgtgtattagttcacactttaaactgcaaggtcaatgacatt--------catatgagtgaaagtcgaatcagatctctagcagccaaagcattc |
167 |
Q |
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| T |
3796931 |
gtgaatgtgtatgagttcacacttttaaatgcaaggtcaatgacattgcttcttccatatgatagaaagttgaatcagatcactagcggccaaagcattg |
3796832 |
T |
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| Q |
168 |
aaggtcagtaattgctttctt |
188 |
Q |
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| T |
3796831 |
aagttccgttatagctttctt |
3796811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 3961099 - 3961159
Alignment:
| Q |
124 |
atatgagtgaaagtcgaatcagatctctagcagccaaagcattcaaggtcagtaattgctt |
184 |
Q |
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||||||| |||||| ||| ||||||||||||||||||| |||| ||||| ||||||||||| |
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| T |
3961099 |
atatgagagaaagttgaaacagatctctagcagccaaatcattgaaggttagtaattgctt |
3961159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Complemental strand, 4221283 - 4221238
Alignment:
| Q |
139 |
gaatcagatctctagcagccaaagcattcaaggtcagtaattgctt |
184 |
Q |
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| T |
4221283 |
gaatcagatctctagcaaacaaagcatttaaggtcagtaattgctt |
4221238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 186
Target Start/End: Complemental strand, 3822750 - 3822703
Alignment:
| Q |
139 |
gaatcagatctctagcagccaaagcattcaaggtcagtaattgctttc |
186 |
Q |
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| T |
3822750 |
gaatcagatctctagcaaacaaagcatttaaggtcagtaatttctttc |
3822703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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