View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12402_low_2 (Length: 381)
Name: NF12402_low_2
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 188 - 365
Target Start/End: Complemental strand, 4840141 - 4839964
Alignment:
| Q |
188 |
ctcacacggttattgtttaaaattaggaaaattctaacgagtcatttgctaagaagacaaatatgataatattggcattaactcatgactaaaaagctaa |
287 |
Q |
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|||| ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840141 |
ctcatacgtttattgtttaaaattaggaaaattctaatgagtcatttgctaagaagacaaatatgataatattggcattaactcatgactaaaaagctaa |
4840042 |
T |
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| Q |
288 |
ggagttaaaagttgaaagtttaaatatacaaatatcatttctctaaaacaaatggtgatatttgaaagtggagtaatt |
365 |
Q |
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| T |
4840041 |
ggagttaaaagttgaaagtttaaatgtataaatatcatttctctaaaacaaatggtaatatttgaaagtggagtaatt |
4839964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4840328 - 4840222
Alignment:
| Q |
1 |
gccgtgtccactacctgcctaaataaatacaacaacagacggggtatgaagatggtatgacatatcttaggggaacaaatctactattcactctattctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4840328 |
gccgtgtccactacctgcctaaataaatacaacaacagacggggtatgaagatggtatgacatatcttaggggaacaaatctactattcactctattctc |
4840229 |
T |
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| Q |
101 |
atgatca |
107 |
Q |
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||||||| |
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| T |
4840228 |
atgatca |
4840222 |
T |
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