View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12402_low_6 (Length: 313)
Name: NF12402_low_6
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 17923976 - 17924263
Alignment:
| Q |
9 |
gaacctgtgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttct |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17923976 |
gaacttgtgttgttttgcatgtttcctacccttgatagggcatggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttct |
17924075 |
T |
|
| Q |
109 |
atttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcatac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||| |
|
|
| T |
17924076 |
atttgggttgcatttccaaatacaccatttgtcggtacctctccttccaacatgttaaaagaaacattcaaatattccaaaaatgagatattttgcatac |
17924175 |
T |
|
| Q |
209 |
catcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17924176 |
catcaggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
17924263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 12931915 - 12931628
Alignment:
| Q |
9 |
gaacctgtgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttct |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12931915 |
gaacttgtgttgttttgcatgtttcctacccttgatagggcatggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcaagtct |
12931816 |
T |
|
| Q |
109 |
atttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcatac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12931815 |
atttgggttgcatttccaaatacaccatttgtcggtacctctccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcatac |
12931716 |
T |
|
| Q |
209 |
catcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
12931715 |
catcaggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttcc |
12931628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 12957714 - 12957427
Alignment:
| Q |
9 |
gaacctgtgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttct |
108 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12957714 |
gaacttgtgttgctttgcatgtttcctacccttgatagggcatggtggtagatgcagatgggaaatacctccacaaagctttttgtttccaatcacttct |
12957615 |
T |
|
| Q |
109 |
atttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcatac |
208 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
12957614 |
atttggcttgcatttccaaatacaccatttgtcggtacctctccttccaatatgttaaaagaaacattcaaatattctaaaacagagatattttgcatac |
12957515 |
T |
|
| Q |
209 |
catcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
12957514 |
catcaggaattgatccagacaattgatttcttgaaacgtctaaatattgaagacctttgagagaagctaaagaggacggtattgttcc |
12957427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 12948273 - 12947993
Alignment:
| Q |
16 |
tgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttggg |
115 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
12948273 |
tgttgctttgcatgtttcctaccattgatagggcatggtggtagatgcaggtgggaaatacctccacatagctttttgtttccaatcacttctatttggg |
12948174 |
T |
|
| Q |
116 |
ttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcagg |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
12948173 |
ttgcatttccaaatacaccatttgtcggtatctctcctaccaacatgttaaaagaaacattcaaatactctaaaacagagatattttgcataccatcagg |
12948074 |
T |
|
| Q |
216 |
aatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
|
|
| T |
12948073 |
aattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagaaaagtcaaagaggacggtattgttcc |
12947993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 12899206 - 12898919
Alignment:
| Q |
9 |
gaacctgtgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttct |
108 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12899206 |
gaacttgtgttgttttacatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacagagctttttgtttccaatcacttct |
12899107 |
T |
|
| Q |
109 |
atttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcatac |
208 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||| |
|
|
| T |
12899106 |
atttgcgttgcatttccaaatacaccatttgtcggtacctctccttccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcatac |
12899007 |
T |
|
| Q |
209 |
catcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12899006 |
catcaggaattgatccagacaattgatttcttgaaaagtctaaatattgaagacctttaagagaagccaaagaggacggtattgttcc |
12898919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 296
Target Start/End: Complemental strand, 12906826 - 12906539
Alignment:
| Q |
9 |
gaacctgtgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttct |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||| |
|
|
| T |
12906826 |
gaacttgtgttgttttgcatgtttcctacccttgatagagcatggtggtagatgcaggtgggaaatgcctccacaaagctttttgtttccaatcaattct |
12906727 |
T |
|
| Q |
109 |
atttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcatac |
208 |
Q |
| |
|
|||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||| ||| |||||||| |||| |||||||||||||||| |
|
|
| T |
12906726 |
atttgggttgaatttccaaataaaccttttgtcggtacctctccttccaacatgttaaaagaaacattaaaatattccaaaaatgagatattttgcatac |
12906627 |
T |
|
| Q |
209 |
catcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12906626 |
catcaggaattgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
12906539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 19)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 10564653 - 10564377
Alignment:
| Q |
19 |
tgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10564653 |
tgttttgcatgtttcctacccttgatagggcatggtggtagatgcagctgggaaatacctccacaaagctttttgtttccaatcacttctatttgggtta |
10564554 |
T |
|
| Q |
119 |
catttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaat |
218 |
Q |
| |
|
|||||||||||||||||| | ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10564553 |
catttccaaatacaccatttaatggtacatctccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaat |
10564454 |
T |
|
| Q |
219 |
agatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttc |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
10564453 |
tgatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccatagaggacggtattgttc |
10564377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 9 - 296
Target Start/End: Original strand, 10763706 - 10763993
Alignment:
| Q |
9 |
gaacctgtgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttct |
108 |
Q |
| |
|
|||| ||||| ||||||||||||| ||||||||| |||||| | ||||||||| || |||||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
10763706 |
gaacttgtgtcgttttgcatgtttaatacccttgacagggcatgatggtagatgtagccgggaaatacctccacaaagcttcttgtttccagtcacttct |
10763805 |
T |
|
| Q |
109 |
atttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcatac |
208 |
Q |
| |
|
||||||| | ||||||||||||| |||| ||| ||||| || |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||| |
|
|
| T |
10763806 |
atttgggatacatttccaaatacgccatttgttggtacttcgccttccaacatgttaaaagaaacattcaaatattcttaaacagatatattttgcataa |
10763905 |
T |
|
| Q |
209 |
catcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
10763906 |
catcaggaattgatccagacaattgatttcttgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttcc |
10763993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 30 - 296
Target Start/End: Original strand, 10747609 - 10747875
Alignment:
| Q |
30 |
tttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaat |
129 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| | ||||||||||||||||||| ||||||||||||| ||||| || |||| ||||||||||| |
|
|
| T |
10747609 |
tttcctacccttgatagggcatggtggtaaatgcagcagcaaaatacctccacaaagcttattgtttccaatcaattctactttggttacatttccaaat |
10747708 |
T |
|
| Q |
130 |
acaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagaca |
229 |
Q |
| |
|
||||||| | | |||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| || ||||||| |
|
|
| T |
10747709 |
acaccattttttggtacctcaccttccaacatgttaaaagaaacattcaaatattctaaaacagagatattttgcataacatcaggaattgacccagaca |
10747808 |
T |
|
| Q |
230 |
attgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|| ||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
10747809 |
atcgatttcttgaaaggtctaaatgttgaagaccttcgagagaagccaaagaggatggtattgttcc |
10747875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 16 - 296
Target Start/End: Original strand, 10741279 - 10741559
Alignment:
| Q |
16 |
tgttgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttggg |
115 |
Q |
| |
|
|||| |||||||||||| ||| ||||||||||||| | ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10741279 |
tgtttttttgcatgtttactatccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagctttttgtttccaatcacttctatttgag |
10741378 |
T |
|
| Q |
116 |
ttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcagg |
215 |
Q |
| |
|
| |||||||||||||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||| ||| |||||||| | | |||| ||||||| |
|
|
| T |
10741379 |
atacatttccaaatacaccatttgttggtacctctccttccaataagttaaaagaaacattcaagtattccaaaccagagatactcttcataacatcagg |
10741478 |
T |
|
| Q |
216 |
aatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
10741479 |
aattgatccagacaattgatttcttgaaaggtctaaactttgaagacctttgagagaagccatagaggatggtattgttcc |
10741559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 296
Target Start/End: Complemental strand, 10611336 - 10611059
Alignment:
| Q |
19 |
tgttttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttg |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||| ||||||||| || |||||||||||||||||||| ||||||||||||| | ||| || || || |
|
|
| T |
10611336 |
tgttttgggtgtttcctacccttgatagggcatggtgctagatgcagctgagaaatacctccacaaagcttattgtttccaatcattgctactttggatg |
10611237 |
T |
|
| Q |
119 |
catttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaat |
218 |
Q |
| |
|
|||||| ||| ||||||| |||||| ||||| ||||||| |||||||||||||| |||||| | ||||||| ||||||| |||||| |||||||||| |
|
|
| T |
10611236 |
catttctaaagacaccatttgtcgggacctcaccttccagcatgttaaaagaaacattcaagtgttctaaacatgagatatcctgcataacatcaggaat |
10611137 |
T |
|
| Q |
219 |
agatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
10611136 |
tgatccagacaattgatttgttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggaaggtattgttcc |
10611059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 34 - 296
Target Start/End: Original strand, 10717538 - 10717800
Alignment:
| Q |
34 |
ctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacac |
133 |
Q |
| |
|
||||||||||||||||| | ||||||||||| | |||||||||||||||||||| | ||||||||||| ||||| |||| ||||||| |||| |||| |
|
|
| T |
10717538 |
ctacccttgatagggcatgatggtagatgcaactctgaaatacctccacaaagcttatagtttccaatcatgtctatatgggatgcatttgcaaaaacac |
10717637 |
T |
|
| Q |
134 |
catctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattg |
233 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| |||||| | ||||||| || |||| || |||||| |||||||||| | ||| ||||||| |
|
|
| T |
10717638 |
catctgttggtacctcaccttccaacatgttaaaagaaacattcaagtgttctaaaccatagattttctgcataacatcaggaattggtccgtacaattg |
10717737 |
T |
|
| Q |
234 |
atttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||||||| |
|
|
| T |
10717738 |
atttcttgaaaggtctaaatatcttaaagccttgagagaagccaaagaggatggtattgttcc |
10717800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 11049244 - 11049517
Alignment:
| Q |
23 |
ttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatt |
122 |
Q |
| |
|
|||||||||| ||||| ||||||||||| | ||||||||||| | |||||||||||||||||||| |||||||| |||| | ||| ||||||||||| |
|
|
| T |
11049244 |
ttgcatgttttctacctttgatagggcatgatggtagatgcaaatctgaaatacctccacaaagcttattgtttcctatcattgctacatgggttgcatt |
11049343 |
T |
|
| Q |
123 |
tccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagat |
222 |
Q |
| |
|
|||||| ||||| | ||| |||||||| |||||||||| ||||||||||| |||||| | || |||| || ||||||| || ||| ||| ||||| ||| |
|
|
| T |
11049344 |
tccaaagacaccgtttgttggtacctcgccttccaacaggttaaaagaaacattcaagtgttttaaaccaaagatattctgtataacatttggaattgat |
11049443 |
T |
|
| Q |
223 |
ccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
||| | ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11049444 |
ccataaaattgatttctagaaaggtctaaatataaaagacctttgagcgaagccaaagaggacggtattgttcc |
11049517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 27 - 296
Target Start/End: Complemental strand, 10580609 - 10580340
Alignment:
| Q |
27 |
atgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttcca |
126 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||| | | |||||||| |||||||| || ||||||||||| | | ||| | ||||||||||||| |
|
|
| T |
10580609 |
atgtttcctacccttgaaagggcatggtggtagatgtaactctgaaataccaccacaaagtttattgtttccaattattgctactctggttgcatttcca |
10580510 |
T |
|
| Q |
127 |
aatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccag |
226 |
Q |
| |
|
|| ||||||||||| |||||||| |||||||||||||||||||||| || || ||||||||| |||||||||||||||| |||| ||| | | |||| |
|
|
| T |
10580509 |
aagacaccatctgttggtacctcaccttccaacatgttaaaagaaacatctaagtattctaaattagagatattttgcataacatcgggatttggtccaa |
10580410 |
T |
|
| Q |
227 |
acaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||| ||||||||||| |||||||| || ||||||||||||||||| |||||||| ||| ||||||| |
|
|
| T |
10580409 |
acaatttatttcttgaaatatctaaataccgtagacctttgagagaagcaaaagaggatggtcttgttcc |
10580340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 296
Target Start/End: Original strand, 10217338 - 10217609
Alignment:
| Q |
23 |
ttgcatgtttcctacccttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatt |
122 |
Q |
| |
|
|||||||||||||||| ||||||||||| | || ||||||| | |||||||||||||||||||| ||||||||||||| | || || || |||| |
|
|
| T |
10217338 |
ttgcatgtttcctaccgttgatagggcatgatgccagatgcaactctgaaatacctccacaaagcttattgtttccaatcattgttacatg--ttacatt |
10217435 |
T |
|
| Q |
123 |
tccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagat |
222 |
Q |
| |
|
|||||| ||||| | ||| |||||||| |||||||||||||||||||||| |||||| | || |||| |||||||||| || || ||| ||||| ||| |
|
|
| T |
10217436 |
tccaaagacaccgtttgttggtacctccccttccaacatgttaaaagaaacattcaagtgttttaaaccagagatattctgtatgacatttggaattgat |
10217535 |
T |
|
| Q |
223 |
ccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
||| | ||||||||||| ||||||||||||||| |||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
10217536 |
ccataaaattgatttctggaaaggtctaaatataaaagacctttgagcgaagccaaagaggatggtattgttcc |
10217609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 39 - 296
Target Start/End: Complemental strand, 10604358 - 10604101
Alignment:
| Q |
39 |
cttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatct |
138 |
Q |
| |
|
||||| || ||| ||||||||||||| || ||||| |||||||||||||| | ||||| |||| | ||| |||||||||||||| ||| ||||| | | |
|
|
| T |
10604358 |
cttgacagagcatggtggtagatgcaactgtgaaattcctccacaaagcttataatttccgatcattgctacttgggttgcatttcgaaagacaccgttt |
10604259 |
T |
|
| Q |
139 |
gtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttc |
238 |
Q |
| |
|
|| || ||||| ||||||||||||||||| |||| |||||| | |||||| ||||||||| |||| | |||||||||| | |||| |||||||||||| |
|
|
| T |
10604258 |
gttggcacctcaccttccaacatgttaaaggaaacattcaagtgttctaagctagagatattctgcaaaacatcaggaattggtccatacaattgatttc |
10604159 |
T |
|
| Q |
239 |
ttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||| ||||||||| | ||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
10604158 |
ttgaaatatctaaatattgtagacctttgagagaagcaaaagaggatggtattgttcc |
10604101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 47 - 290
Target Start/End: Original strand, 19606476 - 19606719
Alignment:
| Q |
47 |
ggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatctgtcggtac |
146 |
Q |
| |
|
|||| |||||||| ||||| || |||||||||||||||||||| ||||| || ||||| ||| | | ||||||||||| ||||| ||| | || || |
|
|
| T |
19606476 |
ggcatggtggtaggtgcagatgcgaaatacctccacaaagcttattgttcccggtcactgctaatgcactagcatttccaaagacaccttctttaggaac |
19606575 |
T |
|
| Q |
147 |
ctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttcttgaaagg |
246 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| |||||||||||||| |||||||||| | || |||||| ||||||| ||| |||||||||| ||| |
|
|
| T |
19606576 |
ctctccatccaacatgttaaaagaaacattcaagtattctaaaacagaaatattttgcagaacactaggaattgatccagtcaaccgatttcttgatagg |
19606675 |
T |
|
| Q |
247 |
tctaaatatcgaagacctttgagagaagccaaagaggacggtat |
290 |
Q |
| |
|
|||||||||||||||||| | |||||||| |||||||| ||||| |
|
|
| T |
19606676 |
tctaaatatcgaagacctctaagagaagctaaagaggatggtat |
19606719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 52 - 296
Target Start/End: Complemental strand, 10601436 - 10601204
Alignment:
| Q |
52 |
ggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatctgtcggtacctctc |
151 |
Q |
| |
|
||||||||||||| || ||||| |||||||||||||| | |||||||||| | ||| | ||||||||||||||| ||||| | ||| || ||||||| |
|
|
| T |
10601436 |
ggtggtagatgcaactgtgaaattcctccacaaagcttgtaatttccaatcaatgctactctggttgcatttccaaagacaccgtttgttggcacctctc |
10601337 |
T |
|
| Q |
152 |
cttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttcttgaaaggtctaa |
251 |
Q |
| |
|
||||||||||||| ||| ||||||||| |||| ||||| | |||| || ||||||| | |||| |||||||||||||||||| ||||| |
|
|
| T |
10601336 |
cttccaacatgtt------------caagtattctaaaccagatatattctccataacaccaggaattggtccatacaattgatttcttgaaatatctaa |
10601249 |
T |
|
| Q |
252 |
atatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||| | ||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
10601248 |
atattgtagacctttgagagcagccaaagaggatggtattgttcc |
10601204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 70 - 296
Target Start/End: Complemental strand, 7192580 - 7192354
Alignment:
| Q |
70 |
gaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaag |
169 |
Q |
| |
|
||||||||||||||||| || |||||||| |||| ||| | | || |||||||||| ||||| ||||| |||||||| |||||||||||||| |||| |
|
|
| T |
7192580 |
gaaatacctccacaaagtttattgtttccggtcacagctaacttgcttacatttccaaagacaccttctgttggtacctcgccttccaacatgttgaaag |
7192481 |
T |
|
| Q |
170 |
aaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgag |
269 |
Q |
| |
|
||| |||||| | ||||||||| || ||||| || | | ||| |||||| | |||| |||| |||||||||| |||||||||||| |||||| ||| | |
|
|
| T |
7192480 |
aaacattcaagtgttctaaaactgatatattctgtagaacattaggaattggtccatacaaccgatttcttgacaggtctaaatattgaagacttttaac |
7192381 |
T |
|
| Q |
270 |
agaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
|||||||| ||||| ||||| ||||| |
|
|
| T |
7192380 |
tgaagccaatgaggatggtatggttcc |
7192354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 290
Target Start/End: Complemental strand, 10558447 - 10558275
Alignment:
| Q |
118 |
gcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaa |
217 |
Q |
| |
|
||||||| ||| ||||| ||| | || |||||||| |||||||||||||| |||| ||||| | ||||||| ||| |||||||||| | | ||||| |
|
|
| T |
10558447 |
gcatttctaaagacaccttcttttggaacctctccatccaacatgttaaatgaaacgttcaagtgttctaaacgagaaatattttgcagaatgttaggaa |
10558348 |
T |
|
| Q |
218 |
tagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtat |
290 |
Q |
| |
|
| ||||||||||||||||||||||| | ||||||||||||||||||| | | | ||||||||||||| ||||| |
|
|
| T |
10558347 |
ttgatccagacaattgatttcttgacatgtctaaatatcgaagacctcttatataagccaaagaggaaggtat |
10558275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 45 - 296
Target Start/End: Original strand, 10660694 - 10660945
Alignment:
| Q |
45 |
agggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatctgtcggt |
144 |
Q |
| |
|
|||||| ||| ||||||| || | |||||||||||||||||||| ||||||||| |||| ||| | || |||||||||| ||||| || | ||| |
|
|
| T |
10660694 |
agggcatggttgtagatgaagctctgaaatacctccacaaagcttattgtttccagtcacaactaacctgcttacatttccaaagacaccttccattggt |
10660793 |
T |
|
| Q |
145 |
acctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttcttgaaa |
244 |
Q |
| |
|
||||| |||||||||||||| ||||| | |||||| | || |||||| || ||||| || | | ||| ||||| | |||||||||| |||||| ||| | |
|
|
| T |
10660794 |
acctcgccttccaacatgttgaaagatacattcaagtgttttaaaactgatatattctgtagaacatttggaatcggtccagacaatcgatttcctgaca |
10660893 |
T |
|
| Q |
245 |
ggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
||||| |||| |||||||||| || |||||||| ||||| ||||| ||||| |
|
|
| T |
10660894 |
agtctagatattgaagacctttaagtgaagccaatgaggatggtatggttcc |
10660945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 120 - 278
Target Start/End: Original strand, 10652883 - 10653041
Alignment:
| Q |
120 |
atttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaata |
219 |
Q |
| |
|
||||||||| ||||| ||| ||||||| ||||||||||||||||| ||||||| |||||| | ||||||||| || ||| |||| | | ||| ||||| |
|
|
| T |
10652883 |
atttccaaagacaccttctttcggtacttctccttccaacatgttgaaagaaacattcaagtgttctaaaactgatatactttgtagaacatttggaatt |
10652982 |
T |
|
| Q |
220 |
gatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaa |
278 |
Q |
| |
|
| |||| |||| |||||||||| | |||||||||| |||||||||| || |||||||| |
|
|
| T |
10652983 |
ggtccatacaaccgatttcttgacaagtctaaatattgaagacctttaagtgaagccaa |
10653041 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 40 - 296
Target Start/End: Original strand, 10589031 - 10589287
Alignment:
| Q |
40 |
ttgatagggcacggtggtagatgcaggtgggaaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatctg |
139 |
Q |
| |
|
||||||||||| || ||||||||||| | ||| |||||||||||||| ||||||||||||| | ||| | |||||||| ||| ||||| | |
|
|
| T |
10589031 |
ttgatagggcatggcggtagatgcagctctaaaactcctccacaaagcttattgtttccaatcattgctaacctgcttgcattttgaaagacacctttca |
10589130 |
T |
|
| Q |
140 |
tcggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttct |
239 |
Q |
| |
|
| || ||||| |||||||||||||| ||||| | ||| || ||||||| | | ||||| |||| || |||||| ||||||||||| |||||||| |
|
|
| T |
10589131 |
ttggaacctcaccttccaacatgttgaaagatacattgaagtattctaggaaaacaatattctgcaaacttgtaggaattgatccagacaactgatttct |
10589230 |
T |
|
| Q |
240 |
tgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttcc |
296 |
Q |
| |
|
||| | |||||||||| |||||||||||||||| ||||||| | | ||||||||||| |
|
|
| T |
10589231 |
tgacatgtctaaatattgaagacctttgagagatgccaaagtgaaaggtattgttcc |
10589287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 196 - 296
Target Start/End: Original strand, 9837088 - 9837188
Alignment:
| Q |
196 |
atattttgcataccatcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgagagaagccaaagaggacggtattgttc |
295 |
Q |
| |
|
|||||||| | ||| |||||||| ||||||||||| |||||||| || | |||||||||| ||||| |||||||||| ||||||| ||| ||||| |||| |
|
|
| T |
9837088 |
atattttggagaccttcaggaattgatccagacaactgatttctagacatgtctaaatattgaagaactttgagagatgccaaagtggaaggtatggttc |
9837187 |
T |
|
| Q |
296 |
c |
296 |
Q |
| |
|
| |
|
|
| T |
9837188 |
c |
9837188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 71 - 290
Target Start/End: Complemental strand, 10550367 - 10550148
Alignment:
| Q |
71 |
aaatacctccacaaagctttttgtttccaatcacttctatttgggttgcatttccaaatacaccatctgtcggtacctctccttccaacatgttaaaaga |
170 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| ||| ||| | ||||||| ||| ||||| | || |||||||||||||||| |||||| || || |
|
|
| T |
10550367 |
aaattcctccacaaagcttattgtttccaataactgtcattgcactggcatttcgaaagacacctttagttggtacctctccttccagcatgttgaatga |
10550268 |
T |
|
| Q |
171 |
aatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttcttgaaaggtctaaatatcgaagacctttgaga |
270 |
Q |
| |
|
||| || ||||||| ||| |||||||||| | | | ||||| ||||| || ||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
10550267 |
tgcattgaagtattctatcgaagaaatattttgcaaaacttttggaattgatccggataattggtttcttgagaggtctaacactcgaagacctttgaga |
10550168 |
T |
|
| Q |
271 |
gaagccaaagaggacggtat |
290 |
Q |
| |
|
|| |||||||||| ||||| |
|
|
| T |
10550167 |
gattccaaagaggatggtat |
10550148 |
T |
|
Back To:
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 142 - 275
Target Start/End: Original strand, 31467868 - 31468001
Alignment:
| Q |
142 |
ggtacctctccttccaacatgttaaaagaaatattcaaatattctaaaacagagatattttgcataccatcaggaatagatccagacaattgatttcttg |
241 |
Q |
| |
|
|||||||| |||||||||||||||||||| | ||| || |||| || | ||| |||||||| | ||| | |||||| ||||||||||| || |||| || |
|
|
| T |
31467868 |
ggtacctcgccttccaacatgttaaaagatacattgaagtattgtaggaaagaaatattttgtagacctttaggaattgatccagacaagtggtttcgtg |
31467967 |
T |
|
| Q |
242 |
aaaggtctaaatatcgaagacctttgagagaagc |
275 |
Q |
| |
|
| |||||||||| | |||| ||||| || ||||| |
|
|
| T |
31467968 |
ataggtctaaatgttgaaggcctttcagtgaagc |
31468001 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 28605149 - 28605089
Alignment:
| Q |
119 |
catttccaaatacaccatctgtcggtacctctccttccaacatgttaaaagaaatattcaa |
179 |
Q |
| |
|
|||||| ||| ||||| || |||||||| || || | |||||||||||||||||||||||| |
|
|
| T |
28605149 |
catttctaaacacaccttcagtcggtacttcaccattcaacatgttaaaagaaatattcaa |
28605089 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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