View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12402_low_9 (Length: 247)
Name: NF12402_low_9
Description: NF12402
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12402_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 16642128 - 16642329
Alignment:
| Q |
31 |
cagcaacagcttattccaacatctgtaatgaaaagtatttcttcaaaatagtctttggatgaggataataatatattaagccacttaaactaatttatta |
130 |
Q |
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| T |
16642128 |
cagcaacagcttattccaacatctgtaatgaaaagtatttcttcaaaatagtctttggatgaggataataatatattaagccacttaaactaatttatta |
16642227 |
T |
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| Q |
131 |
aaacagaccccaatacgctacaccgacaccacatacgccaattcgccacatcactcaatatcataggttgaagtttctctcgtataaatcaacacgccta |
230 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16642228 |
aaacagaccccaatacgctacaccgacaccacatatgtcaattcgccacatcactcaatatcataggttgaagtttctctcgtataaatcaacacgccta |
16642327 |
T |
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| Q |
231 |
tg |
232 |
Q |
| |
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|| |
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| T |
16642328 |
tg |
16642329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 31 - 232
Target Start/End: Original strand, 17616489 - 17616690
Alignment:
| Q |
31 |
cagcaacagcttattccaacatctgtaatgaaaagtatttcttcaaaatagtctttggatgaggataataatatattaagccacttaaactaatttatta |
130 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17616489 |
cagcaacagcttattccaacatctgtaatgaaaagtatttcttcaaaatagtctttggatgaggataataatatattaagccacttaaactaatttatta |
17616588 |
T |
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| Q |
131 |
aaacagaccccaatacgctacaccgacaccacatacgccaattcgccacatcactcaatatcataggttgaagtttctctcgtataaatcaacacgccta |
230 |
Q |
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||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17616589 |
aaacagaccccaatacgctacaccgacaccacatatgtcaattcgccacatcactcaatatcataggttgaagtttctctcgtataaatcaacacgccta |
17616688 |
T |
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| Q |
231 |
tg |
232 |
Q |
| |
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|| |
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| T |
17616689 |
tg |
17616690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 17615539 - 17615502
Alignment:
| Q |
33 |
gcaacagcttattccaacatctgtaatgaaaagtattt |
70 |
Q |
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|||||||||||||||||||||| || |||||||||||| |
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| T |
17615539 |
gcaacagcttattccaacatctttagtgaaaagtattt |
17615502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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