View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12403_low_3 (Length: 301)

Name: NF12403_low_3
Description: NF12403
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12403_low_3
NF12403_low_3
[»] chr7 (14 HSPs)
chr7 (18-176)||(31585276-31585435)
chr7 (177-274)||(39949555-39949652)
chr7 (177-274)||(39953947-39954044)
chr7 (20-176)||(31604535-31604689)
chr7 (20-176)||(31618139-31618293)
chr7 (20-176)||(31608126-31608283)
chr7 (38-170)||(31594932-31595062)
chr7 (23-170)||(31614416-31614561)
chr7 (20-176)||(31575866-31576023)
chr7 (23-94)||(31573042-31573114)
chr7 (54-170)||(31439256-31439370)
chr7 (23-176)||(31540891-31541042)
chr7 (23-170)||(31532271-31532419)
chr7 (23-177)||(33305357-33305506)
[»] chr8 (3 HSPs)
chr8 (177-274)||(30045121-30045218)
chr8 (177-274)||(30049524-30049621)
chr8 (177-274)||(7162477-7162574)
[»] chr4 (3 HSPs)
chr4 (177-274)||(3941379-3941476)
chr4 (177-274)||(3945778-3945875)
chr4 (62-170)||(15063611-15063717)
[»] chr3 (3 HSPs)
chr3 (177-274)||(22361019-22361116)
chr3 (177-274)||(22365406-22365503)
chr3 (196-261)||(23397337-23397404)
[»] chr2 (1 HSPs)
chr2 (176-274)||(1330568-1330666)
[»] chr1 (1 HSPs)
chr1 (23-176)||(52174519-52174670)
[»] chr5 (2 HSPs)
chr5 (177-274)||(196405-196491)
chr5 (177-274)||(200784-200870)
[»] scaffold0394 (1 HSPs)
scaffold0394 (85-170)||(1817-1899)


Alignment Details
Target: chr7 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 18 - 176
Target Start/End: Complemental strand, 31585435 - 31585276
Alignment:
Q  18 gtaggaagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataag-atcttgagcaaggtaatgaacctcttttaaa 116  Q
    ||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  31585435 gtaggaagaactacgacacaggaggttcatgtgcttctgaaatgtactttccagattggatttataaggatcttgagcaaggtaatgaacctcttttaaa 31585336  T
Q  117 ttgtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31585335 ttgtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 31585276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 39949652 - 39949555
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39949652 tgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 39949555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 39954044 - 39953947
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39954044 tgttgactaattgacctataaaacttttctttatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 39953947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 31604689 - 31604535
Alignment:
Q  20 aggaagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaatt 118  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    ||||||||||||    
T  31604689 aggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagattggatttataaggatcttgagcaaggtaat---actcttttaaatt 31604593  T
Q  119 gtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 176  Q
    ||| |||| |||| || ||||||||||| ||||| |||||||||||| |||| |||||    
T  31604592 gttcgacagtctcggaggaagaaaatgatatggtcagaaagattactttggtgagtct 31604535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 31618293 - 31618139
Alignment:
Q  20 aggaagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaatt 118  Q
    ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||    ||||||||||||    
T  31618293 aggaagaactacgacacgggagggtcatgtacttctgaaatgtactttccagattggatttataaggatcttgagcaagggaat---actcttttaaatt 31618197  T
Q  119 gtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 176  Q
    |||  |||||||| || ||||||||||| ||| | |||||||||||| |||| |||||    
T  31618196 gttcaacaatctcggaggaagaaaatgatatgatcagaaagattactttggtgagtct 31618139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 31608283 - 31608126
Alignment:
Q  20 aggaagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaatt 118  Q
    ||||||||||||||||| || ||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||  |  || ||||||||     
T  31608283 aggaagaactacgacactggcgggtcatgtacttctgaaatgtactttccagactggatttataaggatcttgagcaaggtaaccatactgttttaaatg 31608184  T
Q  119 gtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 176  Q
    | |||||||||||    ||||||||||| ||||||||||||||||||||||| |||||    
T  31608183 ggttgacaatctcaacggaagaaaatgatatggttagaaagattactatggtgagtct 31608126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 38 - 170
Target Start/End: Complemental strand, 31595062 - 31594932
Alignment:
Q  38 ggagggtcatgttcttctgaaatgtactttccagattggatttataag-atcttgagcaaggtaatgaacctcttttaaattgtttgacaatctccgaag 136  Q
    |||||||| ||| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||   ||||||||||| ||||||||| || || |    
T  31595062 ggagggtcgtgtacttctgaaatgtactttccagactggatttataaggatcttgagcaaggtaatga---tcttttaaattctttgacaatttcagagg 31594966  T
Q  137 aagaaaatgacatggttagaaagattactatggt 170  Q
    |||||||||| ||||||| |||||||||||||||    
T  31594965 aagaaaatgatatggttaaaaagattactatggt 31594932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 31614561 - 31614416
Alignment:
Q  23 aagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataag-atcttgagcaaggtaatgaacctcttttaaattgtt 121  Q
    |||||||| ||||| |||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||   ||| |  |||||||||||||||    
T  31614561 aagaactatgacactggagggtcatgcacttctgaaatgtactttccagattggatttataagaatcttgagcaa---aataacactcttttaaattgtt 31614465  T
Q  122 tgacaatctccgaagaagaaaatgacatggttagaaagattactatggt 170  Q
    |||||||||| || ||||||||||| ||| |||||||||| ||| ||||    
T  31614464 tgacaatctcagaggaagaaaatgatatgattagaaagatcactttggt 31614416  T

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Target: chr7; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 176
Target Start/End: Complemental strand, 31576023 - 31575866
Alignment:
Q  20 aggaagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaatt 118  Q
    ||||||||||| ||||| |||||||| ||| || | |||||||| |||||||||||||||||||| |||||||||||||||||| |    ||||| || |    
T  31576023 aggaagaactatgacactggagggtcgtgtactccggaaatgtattttccagattggatttataaggatcttgagcaaggtaataataacctttttaact 31575924  T
Q  119 gtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 176  Q
    || |||||   || || ||||||||||| |||||||||||||||||| |||| |||||    
T  31575923 gtatgacatcgtcagaggaagaaaatgatatggttagaaagattactttggtgagtct 31575866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 94
Target Start/End: Original strand, 31573042 - 31573114
Alignment:
Q  23 aagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagc 94  Q
    |||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  31573042 aagaactatgacacaggagggtcgtgtacttctgaaatgtactttccagattggatttataatgatcttgagc 31573114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 170
Target Start/End: Original strand, 31439256 - 31439370
Alignment:
Q  54 ctgaaatgtactttccagattggatttataag-atcttgagcaaggtaatgaacctcttttaaattgtttgacaatctccgaagaagaaaatgacatggt 152  Q
    |||||||||||||||| |||||||| |||||| |||||||||||||||||    |||||| ||||  ||| ||||||||||||||||||||||| || ||    
T  31439256 ctgaaatgtactttccggattggatatataaggatcttgagcaaggtaata---ctctttcaaataatttaacaatctccgaagaagaaaatgatatcgt 31439352  T
Q  153 tagaaagattactatggt 170  Q
     |  ||||||||||||||    
T  31439353 aaagaagattactatggt 31439370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 176
Target Start/End: Complemental strand, 31541042 - 31540891
Alignment:
Q  23 aagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaattgtt 121  Q
    ||||| || ||||| |||||||||||| ||||||||||||  |||||||||||||||||||| ||||||||||||| |||| |||  |||   |||||||    
T  31541042 aagaattatgacactggagggtcatgtacttctgaaatgtgttttccagattggatttataaggatcttgagcaagctaat-aac--cttgctaattgtt 31540946  T
Q  122 tgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 176  Q
    |  ||| |||  | ||||||||||| ||||| |||| |||||||||||| |||||    
T  31540945 tagcaaactcaaaggaagaaaatgatatggtaagaatgattactatggtgagtct 31540891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 23 - 170
Target Start/End: Complemental strand, 31532419 - 31532271
Alignment:
Q  23 aagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaattgtt 121  Q
    ||||| || ||||| |||||||||||| ||||||||||||||||||| || ||||||||||| |||||||| ||||||||| |    ||| | |||| ||    
T  31532419 aagaattatgacactggagggtcatgtacttctgaaatgtactttcctgactggatttataaggatcttgaacaaggtaataataaccttgtgaattatt 31532320  T
Q  122 t-gacaatctccgaagaagaaaatgacatggttagaaagattactatggt 170  Q
    | || ||| || || ||||||||||| ||||| |||||||||||||||||    
T  31532319 tagaaaat-tcagaggaagaaaatgatatggtgagaaagattactatggt 31532271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 23 - 177
Target Start/End: Original strand, 33305357 - 33305506
Alignment:
Q  23 aagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaattgtt 121  Q
    ||||| || ||||| |||||||||||| | || |||||||||||| |||||||||||||||| |||||||||| | ||||| ||||     | |||||||    
T  33305357 aagaattatgacacgggagggtcatgtacatcggaaatgtacttttcagattggatttataaggatcttgagctaagtaat-aacc-----ttaattgtt 33305450  T
Q  122 tgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtctt 177  Q
       ||| ||| |||||||||||||| ||||  ||||||||||||||| | ||||||    
T  33305451 ctgcaaactcagaagaagaaaatgatatggcaagaaagattactatgattagtctt 33305506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 30045121 - 30045218
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30045121 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 30045218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 30049524 - 30049621
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30049524 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 30049621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 7162477 - 7162574
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  7162477 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaatcattttaacttattttgttagtaa 7162574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 3941379 - 3941476
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3941379 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 3941476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 3945778 - 3945875
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3945778 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 3945875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 62 - 170
Target Start/End: Original strand, 15063611 - 15063717
Alignment:
Q  62 tactttccagattggatttataag-atcttgagcaaggtaatgaacctcttttaaattgtttgacaatctccgaagaagaaaatgacatggttagaaaga 160  Q
    |||||||| |||||||| | |||| |||||||||||||||||    | ||||||||| ||||| ||||||| |||||||||||||| ||| | |  ||||    
T  15063611 tactttccggattggatatttaaggatcttgagcaaggtaatt---cccttttaaatagtttggcaatctcagaagaagaaaatgatatgctaaagaaga 15063707  T
Q  161 ttactatggt 170  Q
    ||||||||||    
T  15063708 ttactatggt 15063717  T

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Target: chr3 (Bit Score: 98; Significance: 3e-48; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 22361019 - 22361116
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22361019 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 22361116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 177 - 274
Target Start/End: Original strand, 22365406 - 22365503
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22365406 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 22365503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Complemental strand, 23397404 - 23397337
Alignment:
Q  196 aaaacttttctgaatactttattgtttatgttactttattgctta--tgtgtgtaattattttaactt 261  Q
    |||||||||||||||| ||  ||||| ||||||||||||||| ||  |||||||||| ||||||||||    
T  23397404 aaaacttttctgaatatttcgttgttaatgttactttattgcctatgtgtgtgtaatgattttaactt 23397337  T

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Target: chr2 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 274
Target Start/End: Original strand, 1330568 - 1330666
Alignment:
Q  176 ttgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  1330568 ttgttgactaattgacctataaaacttgtctgaatactttattgtttatgttactctattgcttatgtgtgtaatcattttaacttgttttgttagtaa 1330666  T

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Target: chr1 (Bit Score: 77; Significance: 9e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 52174519 - 52174670
Alignment:
Q  23 aagaactacgacacaggagggtcatgttcttctgaaatgtactttccagattggatttataa-gatcttgagcaaggtaatgaacctcttttaaattgtt 121  Q
    |||||||| ||||| |||||||||||| |||| ||||||||||||||||| ||||||||||| |||||||||||||| |||    |||||| ||||||||    
T  52174519 aagaactatgacactggagggtcatgtacttcagaaatgtactttccagactggatttataaggatcttgagcaaggaaat---actctttcaaattgtt 52174615  T
Q  122 tgacaatctccgaagaagaaaatgacatggttagaaagattactatggtaagtct 176  Q
    |||||||||| || ||||||||||| ||||||| |||||||||| |||| |||||    
T  52174616 tgacaatctcagaggaagaaaatgatatggttataaagattactttggtgagtct 52174670  T

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Target: chr5 (Bit Score: 52; Significance: 8e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 196491 - 196405
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  196491 tgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaa 196405  T

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Target: chr5; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 177 - 274
Target Start/End: Complemental strand, 200870 - 200784
Alignment:
Q  177 tgttgactaattgacctataaaacttttctgaatactttattgtttatgttactttattgcttatgtgtgtaattattttaacttgttttgttagtaa 274  Q
    ||||||||||||||||||||||||||||||||||           ||||||||||||||| ||||||||||||| |||||||||||||||||||||||    
T  200870 tgttgactaattgacctataaaacttttctgaat-----------tatgttactttattgtttatgtgtgtaatcattttaacttgttttgttagtaa 200784  T

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Target: scaffold0394 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 85 - 170
Target Start/End: Complemental strand, 1899 - 1817
Alignment:
Q  85 gatcttgagcaaggtaatgaacctcttttaaattgtttgacaatctccgaagaagaaaatgacatggttagaaagattactatggt 170  Q
    ||||||||||||||||||    ||||||||||| || || ||||||| |||||||||||||| ||| | |  ||||||||||||||    
T  1899 gatcttgagcaaggtaatt---ctcttttaaatagtatggcaatctcagaagaagaaaatgatatgctaaagaagattactatggt 1817  T

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