View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12404_high_1_N (Length: 351)
Name: NF12404_high_1_N
Description: NF12404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12404_high_1_N |
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Alignment Details
Target: chr8 (Bit Score: 319; Significance: 1e-180; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 33660393 - 33660735
Alignment:
| Q |
1 |
aatattctaggatatgagtaaatcatcaacaaaattacaacagaaaccaccagagtagactgattacactgattaacagaagctaattacaaaagtttgt |
100 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33660393 |
aatattctaagatacgagtaaatcatcaacaaaattacaacagaaaccaccagagtagactgattacactgattaacagaagctaattacaaaagtttgt |
33660492 |
T |
|
| Q |
101 |
tgaaaaatatattaggatatttgcatttattgcatacgcatgtggtattgtatttatatcagagggccctattttgagttgaaatcaagagcccttgtct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33660493 |
tgaaaaatatattaggatatttgcatttattgcatacgcatgtggtattgtatttatatcagagggccctattttgagttgaaatcaagagcccttgtct |
33660592 |
T |
|
| Q |
201 |
ctaatctattttctaattccttttcctttgactttgagcctttccctcctacaaccaaaccactttgtctctttccgtcttgcaaccacaaaacagcaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33660593 |
ctaatctattttctaattccttttcctttgactttgagcctttccctcctgcaaccaaaccactttgcctctttccgtcttgcaaccacaaaacagcaac |
33660692 |
T |
|
| Q |
301 |
agcagtgacctacactctgctgccatccactgcagttcatctc |
343 |
Q |
| |
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||||| |||||||||||||||||||||||||||||||| |||| |
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| T |
33660693 |
agcagcgacctacactctgctgccatccactgcagttcttctc |
33660735 |
T |
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