View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12404_low_1 (Length: 546)
Name: NF12404_low_1
Description: NF12404
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12404_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 19 - 542
Target Start/End: Original strand, 33660393 - 33660916
Alignment:
| Q |
19 |
aatattctaggatatgagtaaatcatcaacaaaattacaacagaaaccaccagagtagactgattacactgattaacagaagctaattacaaaagtttgt |
118 |
Q |
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||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33660393 |
aatattctaagatacgagtaaatcatcaacaaaattacaacagaaaccaccagagtagactgattacactgattaacagaagctaattacaaaagtttgt |
33660492 |
T |
|
| Q |
119 |
tgaaaaatatattaggatatttgcatttattgcatacgcatgtggtattgtatttatatcagagggccctattttgagttgaaatcaagagcccttgtct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33660493 |
tgaaaaatatattaggatatttgcatttattgcatacgcatgtggtattgtatttatatcagagggccctattttgagttgaaatcaagagcccttgtct |
33660592 |
T |
|
| Q |
219 |
ctaatctattttctaattccttttcctttgactttgagcctttccctcctataaccaaaccactttgtctctttccgtcttgcaaccacaaaacagcaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
33660593 |
ctaatctattttctaattccttttcctttgactttgagcctttccctcctgcaaccaaaccactttgcctctttccgtcttgcaaccacaaaacagcaac |
33660692 |
T |
|
| Q |
319 |
agcagtgacctacactctgctgccatccactgcagttcttctccgcaaagagaccgaaagtcccacagccgtgctccaccatgagcagaggtctacggcc |
418 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
33660693 |
agcagcgacctacactctgctgccatccactgcagttcttctccgcaaagagaccgaaagtcccacagccgtgctcctccatgagcagaggtctacggcc |
33660792 |
T |
|
| Q |
419 |
attgcgctcttccgagagtactcttcctccttactcttgaatctcaatctctctgcctcattttattttatgtagatctatcagtgcagtaaacatgaca |
518 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
33660793 |
attgtgctcttccgagagtactcttcctccttactcttgaatctcaatctctctgcctcattttattttatgtagatctatcagtgcagtaaacaggaca |
33660892 |
T |
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| Q |
519 |
aacccaagctctgtctctgcttct |
542 |
Q |
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||||||||||||||| |||||||| |
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| T |
33660893 |
aacccaagctctgtcactgcttct |
33660916 |
T |
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