View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12405_high_1 (Length: 1071)

Name: NF12405_high_1
Description: NF12405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12405_high_1
NF12405_high_1
[»] chr7 (4 HSPs)
chr7 (1-868)||(1480243-1481113)
chr7 (469-868)||(43060589-43060986)
chr7 (898-1044)||(1480070-1480213)
chr7 (220-283)||(43061410-43061473)
[»] chr6 (4 HSPs)
chr6 (224-868)||(19180047-19180694)
chr6 (750-867)||(22997902-22998019)
chr6 (750-867)||(23790384-23790501)
chr6 (750-867)||(18144289-18144406)
[»] chr4 (1 HSPs)
chr4 (295-430)||(42801375-42801519)
[»] chr1 (3 HSPs)
chr1 (470-562)||(1380306-1380398)
chr1 (470-562)||(7313493-7313585)
chr1 (471-552)||(50862491-50862572)
[»] chr3 (3 HSPs)
chr3 (471-552)||(49233905-49233986)
chr3 (796-864)||(53554419-53554487)
chr3 (471-552)||(49234476-49234558)
[»] chr2 (1 HSPs)
chr2 (471-552)||(24455812-24455893)


Alignment Details
Target: chr7 (Bit Score: 787; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 787; E-Value: 0
Query Start/End: Original strand, 1 - 868
Target Start/End: Complemental strand, 1481113 - 1480243
Alignment:
Q  1 catacttaatactccatagtacataacacatacaactcaagaaaggctaaaagtcttttttcgcgagctttcttatactaaactcaagaaaggctaaaag 100  Q
    ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  1481113 catacttaacactccgtagtacataacacatacaactcaagaaaggctaaaagtcttttttcgcgagctttcttattctaaactcaagaaaggctaaaag 1481014  T
Q  101 tctgtttttcacgagctttcttatgctaaaatagaagcctcaatacacaaacaaaattacaccatcaatctcctaaagctatcaagcatccaaacaatga 200  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1481013 tctgtttttcacgagctttcttatactaaaatagaagcctcaatacacaaacaaaattacaccatcaatctcctaaagctatcaagcatccaaacaatga 1480914  T
Q  201 tgaaagaaatagtagcgtttcattgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatattt 300  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480913 tgaaagaaatagtagcgtttcaatgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatattt 1480814  T
Q  301 aagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcacttt---- 396  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        
T  1480813 aagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggca 1480714  T
Q  397 ----cactgaactaagcttaatgactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgca 492  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480713 ctttcactgaactaagcttaatgactcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgca 1480614  T
Q  493 gaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaacacccgattcagta 592  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480613 gaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaacacccgattcagta 1480514  T
Q  593 gtaataggaagataccaaaccaaaactaccaaactactacatttaaaccctctatgcattaatcctttcaataaacatatacaatttaattgtgaccaga 692  Q
    |||||||||||||||||||||     |||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||||    
T  1480513 gtaataggaagataccaaacc-----taccaaactactacatttaaaccctctatgtattaatgctttcaataaacatatgcaatttaattgtgaccaga 1480419  T
Q  693 ttctagtgatttgcggccagatttaattgcaagacacgatatcattcaagcatataaaatttcataccttaatatcccttaagcatctcaagcatcacca 792  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480418 ttctagtgatttgcggccagatttaattgcatgacacgatatcattcaagcatataaaatttcataccttaatatcccttaagcatctcaagcatcacca 1480319  T
Q  793 atcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttcaaagttc 868  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1480318 atcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttcaaagttc 1480243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 469 - 868
Target Start/End: Complemental strand, 43060986 - 43060589
Alignment:
Q  469 caaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacac 568  Q
    |||||||||||| |||||| ||||||||||||||||||| |||||||||     ||| |||||||||||||||||||| ||||||||||||||| |||||    
T  43060986 caaaaaccagctttgaactatgcagaaaattacctcaaagttgctccaat----gcagaaaatcaccttgaaccaactatgaattatgcagaaa-aacac 43060892  T
Q  569 gtgcgtaaaacacccgattcagtagtaataggaagataccaaaccaaaacta------ccaaactactacatttaaaccctctatgcattaatcctttca 662  Q
      ||| |||||||| |||||||||   |||| || |||||||||||||||||      ||||||||||||||||||||||| ||||||||||| |  |||    
T  43060891 acgcgaaaaacacctgattcagta---atagaaatataccaaaccaaaactaaaactaccaaactactacatttaaaccctatatgcattaatgccctca 43060795  T
Q  663 ataaacatatacaatttaattgtgaccagattctagtgatttgcggccagatttaattgcaagacacgatatcattcaagcatataaaatttcatacctt 762  Q
    ||||||||||  |||||| |||||||||||||| ||||||||| | || |||||||||||||| ||| |||||||||||||||||||||| ||||||||     
T  43060794 ataaacatatgaaatttatttgtgaccagattccagtgatttgtgacccgatttaattgcaaggcacaatatcattcaagcatataaaatatcatacctc 43060695  T
Q  763 aatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttca 862  Q
    ||||||| |||||  |||||| ||||| |||||||||| ||||||||||||||||||||||| |||||| || |||||||||||||||||| ||||||||    
T  43060694 aatatcctttaagtgtctcaaacatcaacaatcaactttcccttaatcttcttttctacaaatcaatacacataagcatcttagagtcatagcttgttca 43060595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 121; E-Value: 2e-61
Query Start/End: Original strand, 898 - 1044
Target Start/End: Complemental strand, 1480213 - 1480070
Alignment:
Q  898 taccattgatagttatgtcaatgaagctaacaaagaagttcttaacaaaaatgtgaaggcaaaagatttacagttctaatctaattcaacactggaggag 997  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||   ||||    
T  1480213 taccattgatagttatgtcaatgaagctaacaaagaagttcttaaaaaaaatgtgaaggcaaaagatttacagttctaatataattcaacact---ggag 1480117  T
Q  998 tgtcaatcgcacgacaacattaacattaacagtaagcatccgtaact 1044  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||    
T  1480116 tgtcaatcgcacgacaacattaacgttaacagtaagcatccgtaact 1480070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 220 - 283
Target Start/End: Complemental strand, 43061473 - 43061410
Alignment:
Q  220 tcattgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatg 283  Q
    |||||||| || |||||| |||||||| ||||||||||||||||||||| ||||||||||||||    
T  43061473 tcattgttacaactttcattgtcgtctccaattctcatattgttgcaacatcgtgcatactatg 43061410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 588; Significance: 0; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 224 - 868
Target Start/End: Complemental strand, 19180694 - 19180047
Alignment:
Q  224 tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19180694 tgttccatctttcaatgtcgtcttcaattctcatattgttgcaacctcgtgcatactatgtgaaaccctacatatttaagtgagtttggtggagtaaaaa 19180595  T
Q  324 tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataattcttttgtcacttt--------cactgaactaagcttaatg 415  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||        |||||||||||||||||||    
T  19180594 tgaaaataaaccttaggtcttatattagtttaattaattaatgatattaatataataatttttttgtcactttggcactttcactgaactaagcttaatg 19180495  T
Q  416 actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19180494 actcagatgttcactgaaccaagtgcagaagaaataccgctacgtaccagctgcaaaaaccagctctgaactttgcagaaaattacctcaaacttgctcc 19180395  T
Q  516 aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaacacccgattcagtagtaataggaagataccaaaccaa 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  19180394 aaattaagcataaaatcaccttgaaccaactctgaattatgcagaaagaacacgtgcgtaaaacacccgattcagtagtaataggaagataccaaacc-- 19180297  T
Q  616 aactaccaaactactacatttaaaccctctatgcattaatcctttcaataaacatatacaatttaattgtgaccagattctagtgatttgcggccagatt 715  Q
       |||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19180296 ---taccaaactactacatttaaaccctctatggattaatgctttcaataaacatatgcaatttaattgtgaccagattctagtgatttgcggccagatt 19180200  T
Q  716 taattgcaagacacgatatcattcaagcatataaaatttcataccttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttctt 815  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19180199 taattgcaagacacgatatcattcaagcatataaaatttcataccttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttctt 19180100  T
Q  816 ttctacaaaccaatacccagaagcatcttagagtcataacttgttcaaagttc 868  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19180099 ttctacaaaccaatacccagaagcatcttagagtcataacttgttcaaagttc 19180047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 750 - 867
Target Start/End: Complemental strand, 22998019 - 22997902
Alignment:
Q  750 aatttcataccttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagt 849  Q
    |||| ||||||| ||||||| |||| |||||||| ||| |  |||||||||||| ||||||||| ||| |||||| |||  |||| |||||| ||| |||    
T  22998019 aattgcatacctcaatatcctttaaacatctcaaacataaaaaatcaacttcccattaatcttcctttatacaaatcaaatcccaaaagcattttaaagt 22997920  T
Q  850 cataacttgttcaaagtt 867  Q
    || |||||||||||||||    
T  22997919 cacaacttgttcaaagtt 22997902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 750 - 867
Target Start/End: Original strand, 23790384 - 23790501
Alignment:
Q  750 aatttcataccttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagt 849  Q
    |||| ||||||| ||||||| |||| |||||||| ||| |  |||||||||||| ||||||||| ||| |||||| |||  |||| |||||| ||| |||    
T  23790384 aattgcatacctcaatatcctttaaacatctcaaacataaaaaatcaacttcccattaatcttcctttatacaaatcaaatcccaaaagcattttaaagt 23790483  T
Q  850 cataacttgttcaaagtt 867  Q
    || |||||||||||||||    
T  23790484 cacaacttgttcaaagtt 23790501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 750 - 867
Target Start/End: Complemental strand, 18144406 - 18144289
Alignment:
Q  750 aatttcataccttaatatcccttaagcatctcaagcatcaccaatcaacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagt 849  Q
    |||| ||||||| ||||||| |||| |||||||| ||| |   ||||||||||| |||||| |  ||| |||||| |||   ||| |||||||||| |||    
T  18144406 aattgcatacctcaatatcctttaaacatctcaaacataaaatatcaacttcccattaatcatgctttatacaaatcaaacaccaaaagcatcttaaagt 18144307  T
Q  850 cataacttgttcaaagtt 867  Q
    |||||||| |||||||||    
T  18144306 cataacttattcaaagtt 18144289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 4e-44
Query Start/End: Original strand, 295 - 430
Target Start/End: Original strand, 42801375 - 42801519
Alignment:
Q  295 atatttaagtgagtttggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaatta-atgatattaatataataattcttttgt--- 390  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||       
T  42801375 atatttaagtgagttgggtggagtaaaaatgaaaataaaccttaggtcttatattagtttaattaattatattatattaatataataattcttttgtcac 42801474  T
Q  391 -----cactttcactgaactaagcttaatgactcagatgttcact 430  Q
         |||||||||| |||| ||||||||||||||||||||||||    
T  42801475 tttggcactttcactaaactgagcttaatgactcagatgttcact 42801519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 470 - 562
Target Start/End: Complemental strand, 1380398 - 1380306
Alignment:
Q  470 aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa 562  Q
    ||||| |||||||||||| ||||||| |||||||| |||  ||||||||||| | | ||||| | ||| ||||| ||||||||||||||||||    
T  1380398 aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctctgaattatgcagaaa 1380306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 470 - 562
Target Start/End: Complemental strand, 7313585 - 7313493
Alignment:
Q  470 aaaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaattatgcagaaa 562  Q
    ||||| |||||||||||| ||||||| |||||||| |||  ||||||||||| | | ||||| | ||| ||||| |||  |||||||||||||    
T  7313585 aaaaatcagctctgaactatgcagaatattacctcgaacacgctccaaattatgaagaaaattatcttaaaccatctccaaattatgcagaaa 7313493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 471 - 552
Target Start/End: Complemental strand, 50862572 - 50862491
Alignment:
Q  471 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 552  Q
    |||| ||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||  ||||||||||| ||||||||    
T  50862572 aaaatcagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaactaccttgaaccagctctgaat 50862491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 49233905 - 49233986
Alignment:
Q  471 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 552  Q
    |||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| ||||||||    
T  49233905 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat 49233986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 796 - 864
Target Start/End: Original strand, 53554419 - 53554487
Alignment:
Q  796 aacttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttcaaa 864  Q
    |||||||||||||||||| ||||| |||| |||  |||||||||||||||||| | || ||||||||||    
T  53554419 aacttccccttaatcttcctttcttcaaatcaaaccccagaagcatcttagagccgtagcttgttcaaa 53554487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 471 - 552
Target Start/End: Original strand, 49234476 - 49234558
Alignment:
Q  471 aaaaccagctctgaactttgca-gaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 552  Q
    |||||||||||| || | |||| |||||| ||||| | || ||||||||||| ||||||||| ||||||||||| ||||||||    
T  49234476 aaaaccagctctaaattatgcaagaaaatcacctcgatctcgctccaaattatgcataaaattaccttgaaccagctctgaat 49234558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 471 - 552
Target Start/End: Complemental strand, 24455893 - 24455812
Alignment:
Q  471 aaaaccagctctgaactttgcagaaaattacctcaaacttgctccaaattaagcataaaatcaccttgaaccaactctgaat 552  Q
    |||||||||||| || | |||||||||| ||||| | || ||||||||||| ||| ||||| ||||||||||| ||||||||    
T  24455893 aaaaccagctctaaattatgcagaaaatcacctcgatctcgctccaaattatgcagaaaattaccttgaaccagctctgaat 24455812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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