View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12405_high_2 (Length: 524)
Name: NF12405_high_2
Description: NF12405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12405_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 470; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Original strand, 3001624 - 3002144
Alignment:
| Q |
1 |
aattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggtgttgcctca |
100 |
Q |
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| T |
3001624 |
aattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggtgttgcctca |
3001723 |
T |
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| Q |
101 |
ttttggaaaatgaagtgctgtttttaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaatattttact |
200 |
Q |
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| T |
3001724 |
ttttggaaaatgaagtgctgctttcaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaatattttact |
3001823 |
T |
|
| Q |
201 |
agcatgtgttggttatgaatatgaatataatgtgctttggcatctgctgctgcacaatataatgattgtatgtaatgatatattataataaatgggatag |
300 |
Q |
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| T |
3001824 |
agcatgtgttggttatgaatatgaatataatgtgctttggcatctgctgctgcacaatataatgattgtatgtaatgatatattatactaaatgggatag |
3001923 |
T |
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| Q |
301 |
taatactatttaaaggttgcataa-----aattgctgcagtttcttgtccaaactttatgacttttgacttgtttttacatagttatcctggagcagaca |
395 |
Q |
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| T |
3001924 |
taatactatttaaaggttgcataaatggtaattgctgcagtttcttgtccaaactttatgacttttgacttgtttttacatagttatcttggagcagaca |
3002023 |
T |
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| Q |
396 |
attctacgacattgactactactcaaggatatcgctcagtaagtagtttaaattaatatattattgtttttgttagtttgtcatcgcatggaatggatag |
495 |
Q |
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| T |
3002024 |
attctacgacattgactactactcaaggatatcgctcagtaagtagtttaaattaatatattattgttttt-ttagtttgccatcgcatggaatggatag |
3002122 |
T |
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| Q |
496 |
tgaatgttgttttttcatctca |
517 |
Q |
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| T |
3002123 |
tgaatgttgttttttcacctca |
3002144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 32706826 - 32707092
Alignment:
| Q |
1 |
aattctactctccaagacacaggtatagcaggtataggcgtggtgcatcaatttcacttccaaatatcccacatatccctttaagcatggtgttgcctca |
100 |
Q |
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||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32706826 |
aattctactttccaagacacaggcatagcagctataggcgtggtgcatcaatttcacttccaaatatcccagatatccctttaagcatggtgttgcctca |
32706925 |
T |
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| Q |
101 |
ttttggaaaatgaagtgctgtttttaagatgctcaatacgtaagctactgcagttttttgtgcaatgtctaaattgttgccactacggaaatattttact |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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| T |
32706926 |
ttttggaaaatgaagtgctgtttttaagattctcaatacgtaagctactgcagttttttgtgcaatgtctaaattg-tgccgctacggaaatattttact |
32707024 |
T |
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| Q |
201 |
agcatgtgttggttatgaatatgaatataatgtgctttggcatctgctgctgcacaatataatgattg |
268 |
Q |
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|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
32707025 |
agcatgcgttggttatgaatatgaatataatgtgcttttacatctgctgctgcacaatataatgattg |
32707092 |
T |
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