View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12405_high_4 (Length: 360)
Name: NF12405_high_4
Description: NF12405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12405_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 6 - 360
Target Start/End: Complemental strand, 34592084 - 34591730
Alignment:
| Q |
6 |
agtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgtacactacagttaagattaatatatgtatagta |
105 |
Q |
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| T |
34592084 |
agtgagatgaatgagttgcttcattttctctacattcatactagaaagttgcactcatatatgaatgtacactacagttaagattaatatatgtatagta |
34591985 |
T |
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| Q |
106 |
acgagaaaaaagtaagagtggtggtaactagtaagatagtaaaaatgtcacaagttaaaacagtgttttttccttgacagagtgatgacattacaagtta |
205 |
Q |
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| T |
34591984 |
acgagaaaaaagtaagtgtggtggtaactagtaagatagtaaaaaggtcacaagttaaaacagtgttttttccttgacagagtgatgacattaaaagtta |
34591885 |
T |
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| Q |
206 |
aaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgtttatgcgtacgtgcatgtctgtttgtttcagcaa |
305 |
Q |
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| T |
34591884 |
aaatgtagttctgcacgaggattaattaattttaaaagtgttgaatttattatgatattgacatgcttatgcgtacgtgcatgtctgtttggttcagcga |
34591785 |
T |
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| Q |
306 |
tgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaat |
360 |
Q |
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| T |
34591784 |
tgataaaaactgattttgcgaaattgatttgtaaaatttatatatggttgaaaat |
34591730 |
T |
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