View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12405_high_5 (Length: 360)
Name: NF12405_high_5
Description: NF12405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12405_high_5 |
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Alignment Details
Target: chr8 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 32836120 - 32836471
Alignment:
| Q |
1 |
taaggagagctcagttttatctcttgttttttgatgaaattgaacttgattttccgaaccgtgatagcttgttaaaaaatgtggatttctttgacgattt |
100 |
Q |
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| T |
32836120 |
taaggagagctcagttttatctcttgttttttgatgaaattgaacttgattttccgaaccgtgatagcttgttcaaaaatgtggatttctttgacgattt |
32836219 |
T |
|
| Q |
101 |
cttttcttcatattgatcgttggaatctctagatttgtcgagattctgctcaaagcaaccttcgctctcgacatcccttaaaagtcggagcagttccaac |
200 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32836220 |
cttttcttcatattgatagttggaatctctagatttgtcgagattctgctcaaagcaaccttcgctctcgacatcccttaaaagtcggagcagttccaac |
32836319 |
T |
|
| Q |
201 |
gcatacacctttgtgctatcgtttcccatattggagatattgacaagatacggtataataccctcctccataaccaactcacaatattccacgcgttgag |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32836320 |
gcatacacctttgtgccatcgtttcccatattggagatattgacaagatacggtataataccctcctccataaccaactcacaatattccacgcgttgag |
32836419 |
T |
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| Q |
301 |
agcacaaagagagtacaatcgccagtgcaaattccttttcttcgtctgtgct |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32836420 |
agcacaaagagagtacaatcgccagtgcaaattccttttcttcgtctgtgct |
32836471 |
T |
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