View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12405_high_6 (Length: 314)
Name: NF12405_high_6
Description: NF12405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12405_high_6 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 9 - 314
Target Start/End: Complemental strand, 25825591 - 25825286
Alignment:
| Q |
9 |
agcaaagggaagattgagagtttgcatcataagagagttggttcaacattgtcttttagagagccaccaacttttcaaatgagtgaaaatgagagctttt |
108 |
Q |
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| T |
25825591 |
agcaatgggaagattgagagtttgcatcataagagagttggttcaacattgtcttttagagagccaccaacttttcaaatgagtgaaaatgagagctttt |
25825492 |
T |
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| Q |
109 |
ttgtgcttagttttggaaatgaaggtgagagtggtaaagggttgaaatcaagtgggagaaaaaagaaaatgagttgttcagaattgaaggagaagaagaa |
208 |
Q |
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| T |
25825491 |
ttgtgcttagttttggaaatgaaggtgagagtggtaaagggttgaaatcaaatgggagaaaaaagaaaatgagttgttcagaattgaaggagaagaagaa |
25825392 |
T |
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| Q |
209 |
caagggagagaatgtttgtgatgagaaagtgagcaaaagggtttctaataaacttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtct |
308 |
Q |
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|||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25825391 |
caagagagagattgtttgtgatgagaaaatgagcaaaagggtttctaataaacttcaagaaatcaccaatacttcgcatcggtttaaggcttcttcgtct |
25825292 |
T |
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| Q |
309 |
gaaaag |
314 |
Q |
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|||||| |
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| T |
25825291 |
gaaaag |
25825286 |
T |
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