View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12405_high_7 (Length: 312)
Name: NF12405_high_7
Description: NF12405
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12405_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 33079722 - 33080021
Alignment:
| Q |
1 |
cccacttttctttcaacttcctcaactctacaacttcagattccaactcactgttctttctttttaccacatcaattgcattctcatcatccactctttt |
100 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
33079722 |
cccacttttctttcaacttcctcaactccacaacttcagattccaactcactgttctttctctttaccacatcaattgcattctcatcatccactctttt |
33079821 |
T |
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| Q |
101 |
tcccttcagctccaaaacttcatgctctaacttagcattctttctccttaccacatcaagtgcatttccatcttccaccccttttttcttcaactcctcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |
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| T |
33079822 |
tcccttcagctccaaaacttcatgctctaacttagcattctttctccttaccacatcaagtgcatttccatcttccacccttttttccttcaactcctcc |
33079921 |
T |
|
| Q |
201 |
aactcttcaactacctttccatcttccaccattttatcctccaataccttgtttcgaaggtcatcaaaaccattactatcatctagccacttttccttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33079922 |
aactcttcaactacctttccatcttccaccattttatcctccaataccttgtttcgaaggtcatcaaaaccattactatcatctagccacttttccttca |
33080021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 47 - 178
Target Start/End: Original strand, 33080157 - 33080288
Alignment:
| Q |
47 |
ctcactgttctttctttttaccacatcaattgcattctcatcatccactctttttcccttcagctccaaaacttcatgctctaacttagcattctttctc |
146 |
Q |
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||||| ||||||| |||||| |||||||| |||||| |||| ||||| |||||| | |||| |||||||||||||| || || | |||||||| | |
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| T |
33080157 |
ctcacagttctttgtttttagcacatcaagtgcattgccatcttccacacttttttctttcaactccaaaacttcattgtccaatacaccattctttttt |
33080256 |
T |
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| Q |
147 |
cttaccacatcaagtgcatttccatcttccac |
178 |
Q |
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|||| || ||||||| |||| ||||||||||| |
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| T |
33080257 |
cttagcatatcaagttcattcccatcttccac |
33080288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 75
Target Start/End: Original strand, 33080008 - 33080081
Alignment:
| Q |
2 |
ccacttttctttcaacttcctcaactctacaacttcagattccaactcactgttctttctttttaccacatcaa |
75 |
Q |
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||||||||| |||||||| ||||||| | ||||| |||||||||||||| ||||||| |||||| ||| |||| |
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| T |
33080008 |
ccacttttccttcaactttgtcaactccaaaactttagattccaactcacagttctttgtttttagcacgtcaa |
33080081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 300
Target Start/End: Original strand, 41519403 - 41519450
Alignment:
| Q |
253 |
ttcgaaggtcatcaaaaccattactatcatctagccacttttccttca |
300 |
Q |
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| T |
41519403 |
ttcgaagctcatcaagagcattactatcatctaaccacttttccttca |
41519450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 41519489 - 41519544
Alignment:
| Q |
138 |
ttctttctccttaccacatcaagtgcatttccatcttccaccccttttttcttcaa |
193 |
Q |
| |
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|||||||| ||| |||||||||||||||||||||||||||| ||||| |||||| |
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| T |
41519489 |
ttctttctgtttagcacatcaagtgcatttccatcttccaccattttttccttcaa |
41519544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 300
Target Start/End: Original strand, 41509176 - 41509230
Alignment:
| Q |
246 |
accttgtttcgaaggtcatcaaaaccattactatcatctagccacttttccttca |
300 |
Q |
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|||||| ||||||| |||| || | || ||||||||||||||||||||||||||| |
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| T |
41509176 |
accttgcttcgaagctcattaagagcagtactatcatctagccacttttccttca |
41509230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 72
Target Start/End: Original strand, 41509217 - 41509287
Alignment:
| Q |
2 |
ccacttttctttcaacttcctcaactctacaacttcagattccaactcactgttctttctttttaccacat |
72 |
Q |
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||||||||| ||||||||| |||||| | ||||| |||||| | ||||| |||||||||||||| ||||| |
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| T |
41509217 |
ccacttttccttcaacttctccaactccaaaactttagattctagctcacagttctttctttttagcacat |
41509287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 195
Target Start/End: Original strand, 41509351 - 41509491
Alignment:
| Q |
55 |
tctttctttttaccacatcaattgcattctcatcatccactctttttcccttcagctccaaaacttcatgctctaacttagcattctttctccttaccac |
154 |
Q |
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||||| |||||| || |||||||||||| |||| ||| | |||||| |||| |||||||||||||| ||||| | | | |||||| | |||| || |
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| T |
41509351 |
tctttgtttttagcatatcaattgcattgccatcttccgcactttttttattcaactccaaaacttcattgtctaattcaaccttcttttttcttaacat |
41509450 |
T |
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| Q |
155 |
atcaagtgcatttccatcttccaccccttttttcttcaact |
195 |
Q |
| |
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||||||| |||| ||||| ||||||| ||||| ||||||| |
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| T |
41509451 |
atcaagttcattcccatcctccacccttttttctttcaact |
41509491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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