View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12406_high_4 (Length: 325)

Name: NF12406_high_4
Description: NF12406
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12406_high_4
NF12406_high_4
[»] chr4 (11 HSPs)
chr4 (153-309)||(47326471-47326627)
chr4 (153-309)||(47341267-47341423)
chr4 (157-309)||(36013632-36013783)
chr4 (153-309)||(39869940-39870095)
chr4 (33-155)||(36013436-36013559)
chr4 (107-155)||(39869829-39869877)
chr4 (107-155)||(47326353-47326401)
chr4 (107-155)||(47341149-47341197)
chr4 (235-295)||(55514149-55514209)
chr4 (249-295)||(39112500-39112546)
chr4 (249-290)||(38010027-38010068)
[»] chr3 (2 HSPs)
chr3 (153-305)||(31598470-31598621)
chr3 (107-155)||(31598356-31598404)
[»] chr6 (2 HSPs)
chr6 (153-305)||(16765467-16765619)
chr6 (107-155)||(16765682-16765730)
[»] chr5 (2 HSPs)
chr5 (235-295)||(9142249-9142307)
chr5 (249-295)||(35262798-35262844)
[»] chr1 (1 HSPs)
chr1 (249-290)||(2687136-2687177)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 153 - 309
Target Start/End: Original strand, 47326471 - 47326627
Alignment:
Q  153 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatcnnnnnnnnnaactggatgttagtaaataagtaagtaatta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||    
T  47326471 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaactgcagatctttttttttaactggatgttagtaaataagtaagtaatta 47326570  T
Q  253 gtttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgtgaat 309  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47326571 gtttgaataagtcttattttaagaacaattgggagaggaaaaatacttggtgtgaat 47326627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 153 - 309
Target Start/End: Original strand, 47341267 - 47341423
Alignment:
Q  153 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatcnnnnnnnnnaactggatgttagtaaataagtaagtaatta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||         |||||||||||||||||||||||||||||||    
T  47341267 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaactgcagatctttttttttaactggatgttagtaaataagtaagtaatta 47341366  T
Q  253 gtttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgtgaat 309  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47341367 gtttgaataagtcttattttaagaacaattgggagaggaaaaatacttggtgtgaat 47341423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 157 - 309
Target Start/End: Original strand, 36013632 - 36013783
Alignment:
Q  157 ggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatcnnnnnnnnnaactggatgttagtaaataagtaagtaattagttt 256  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||    
T  36013632 ggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatctttttttt-aactggatgttagtaaataagtaagtaattagttt 36013730  T
Q  257 gaataagtcttattttaggaacaattgggagaggaaaaatacttggtgtgaat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36013731 gaataagtcttattttaggaacaattgggagaggaaaaatacttggtgtgaat 36013783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 153 - 309
Target Start/End: Original strand, 39869940 - 39870095
Alignment:
Q  153 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatcnnnnnnnnnaactggatgttagtaaataagtaagtaatta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||| ||||||||||||||||||||||||||    
T  39869940 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatctttttttt-aactagatgttagtaaataagtaagtaatta 39870038  T
Q  253 gtttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgtgaat 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39870039 gtttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgtgaat 39870095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 33 - 155
Target Start/End: Original strand, 36013436 - 36013559
Alignment:
Q  33 atcatttctat-atgtaaattcgtcatcaggttcgactttgtcttccccaaccataccggaagtgattggaaaccctcccacggttgtctgccatggctc 131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||||||||||||||    
T  36013436 atcatttctattatgtaaattcgtcatcaggttcgactttgtcttccccaatcataccggaagtgatcggaaactctcccacggttgtctgccatggctc 36013535  T
Q  132 tccggcgaaggttgtttaaggaaa 155  Q
    |||| |||||||||||||||||||    
T  36013536 tccgacgaaggttgtttaaggaaa 36013559  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 39869829 - 39869877
Alignment:
Q  107 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  39869829 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 39869877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 47326353 - 47326401
Alignment:
Q  107 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47326353 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 47326401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 47341149 - 47341197
Alignment:
Q  107 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47341149 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 47341197  T

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Target: chr4; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 235 - 295
Target Start/End: Original strand, 55514149 - 55514209
Alignment:
Q  235 taaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 295  Q
    ||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  55514149 taaataaataaataattagtttgaataagtcttattttagaaacaattgggagaggaaaaa 55514209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 249 - 295
Target Start/End: Complemental strand, 39112546 - 39112500
Alignment:
Q  249 attagtttgaataagtcttattttaggaacaattgggagaggaaaaa 295  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||    
T  39112546 attagtttgaataagttttattttagaaacagttgggagaggaaaaa 39112500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Original strand, 38010027 - 38010068
Alignment:
Q  249 attagtttgaataagtcttattttaggaacaattgggagagg 290  Q
    |||| ||||||||||||||||||||| |||| ||||||||||    
T  38010027 attattttgaataagtcttattttagaaacagttgggagagg 38010068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 109; Significance: 8e-55; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 153 - 305
Target Start/End: Original strand, 31598470 - 31598621
Alignment:
Q  153 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatcnnnnnnnnnaactggatgttagtaaataagtaagtaatta 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||| |||||| ||||||||||||||||||    
T  31598470 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatctttttttt-aactgaatgttaataaataagtaagtaatta 31598568  T
Q  253 gtttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgt 305  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31598569 ttttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgt 31598621  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 107 - 155
Target Start/End: Original strand, 31598356 - 31598404
Alignment:
Q  107 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 155  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||    
T  31598356 ctcccacggttgtctgccatggctctccagcgaaggttgtttaaggaaa 31598404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 153 - 305
Target Start/End: Complemental strand, 16765619 - 16765467
Alignment:
Q  153 aaagggtggggatggtggttccttgatctacttatttatttgaagaaaaaattgcagatcnnnnnnnnnaactggatgttagtaaataagtaagtaatta 252  Q
    |||||||  |||||||||| ||||||||||||||||||||||||||||||| ||||||||         |||||||||||||||||| ||||||||||||    
T  16765619 aaagggtaaggatggtggtcccttgatctacttatttatttgaagaaaaaactgcagatctttttttttaactggatgttagtaaatcagtaagtaatta 16765520  T
Q  253 gtttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgt 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16765519 gtttgaataagtcttattttaggaacaattgggagaggaaaaatacttggtgt 16765467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 155
Target Start/End: Complemental strand, 16765730 - 16765682
Alignment:
Q  107 ctcccacggttgtctgccatggctctccggcgaaggttgtttaaggaaa 155  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||    
T  16765730 ctcccacggttgtctgccatggctctccagtgaaggttgtttaaggaaa 16765682  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 235 - 295
Target Start/End: Complemental strand, 9142307 - 9142249
Alignment:
Q  235 taaataagtaagtaattagtttgaataagtcttattttaggaacaattgggagaggaaaaa 295  Q
    ||||||| ||| ||||||||||||||||||||  |||| | ||||||||||||||||||||    
T  9142307 taaataaataaataattagtttgaataagtct--tttttgaaacaattgggagaggaaaaa 9142249  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 249 - 295
Target Start/End: Original strand, 35262798 - 35262844
Alignment:
Q  249 attagtttgaataagtcttattttaggaacaattgggagaggaaaaa 295  Q
    |||||||||||||||| ||||||||| |||| |||||||||| ||||    
T  35262798 attagtttgaataagttttattttagaaacagttgggagagggaaaa 35262844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 2687177 - 2687136
Alignment:
Q  249 attagtttgaataagtcttattttaggaacaattgggagagg 290  Q
    |||| ||||||||||||||||||||| |||| ||||||||||    
T  2687177 attattttgaataagtcttattttagaaacagttgggagagg 2687136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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