View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12407_high_3 (Length: 347)
Name: NF12407_high_3
Description: NF12407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12407_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 17 - 328
Target Start/End: Complemental strand, 2327908 - 2327596
Alignment:
| Q |
17 |
ggtagataatgaacttgtaaccatttgtgtaccctaaaaatcaccacacaaatttaccnnnnnnn-agagagaatcatcctacttctttacccaatgttt |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
2327908 |
ggtagataatgaacttataaccatttgtgtaccctaaaaaccatcacacaaatttacattttttttagagagaatcatcctacttctttacccaatgttt |
2327809 |
T |
|
| Q |
116 |
tttatgcagtaaacgannnnnnnaagccaaacctattataactgtacacacactattaagcaatagttgacaccagtttcctttttcgggaaacgaaggt |
215 |
Q |
| |
|
|||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2327808 |
tttatgcagtgatcgatttttttaagccaaacctattataactgtacacacactattaagcaatagttgacaccagtttcctttttcgggaaacgaaggt |
2327709 |
T |
|
| Q |
216 |
tggtagctatcgaaaattgttgatttttcaaggggggcacactgaaaaggttaattcaataccaaagtgtgttatctggtttatgtgggggttaaccctg |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2327708 |
tggtagctatcgaaaattgtttatttttcaaggggggcacactgaaaaggttaattcaataccaaagtgtgttatctggtatatgtgggggttaaccctg |
2327609 |
T |
|
| Q |
316 |
agaatggtgctat |
328 |
Q |
| |
|
||||||||||||| |
|
|
| T |
2327608 |
agaatggtgctat |
2327596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University