View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12407_low_2 (Length: 505)
Name: NF12407_low_2
Description: NF12407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12407_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 42422712 - 42423200
Alignment:
| Q |
1 |
tcaggaaacaacgccaatttaagaaattgggtattcctgcaattgagcttgaatatttgttcatacatacttgaacaaaggatggaagcaaatattgaac |
100 |
Q |
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| T |
42422712 |
tcaggaaacaacgcgaatttaagaaattgggtattcctgcaattgagcttgaatatttgttcatacatacttgaacaaaggatggaagcaaatattgaac |
42422811 |
T |
|
| Q |
101 |
tcgtgcaacaatacacaattcaaattaaacatgggaatttattgcacaccttagaattgaagtaaatgaaaattttctccatgtgcacaaataaaggtac |
200 |
Q |
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||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
42422812 |
tcgtgcaccaatgcacacttcaaattaaacatgggaatttattgcacaccttagaattgaagtaaatgaaaattttctccatgtgcacaaagaaaggtac |
42422911 |
T |
|
| Q |
201 |
tggtacaaagcactgacatctcacataatacaacccaaagactagaatacaatcccacaaaatagaagggtaacataaattttattagcagtgttaggag |
300 |
Q |
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| T |
42422912 |
tggtacaaagcactggcatctcacataatacaacccaaagactagaatacagtcccacaaaatagaagggtaacataaattttattagcagtgttaggag |
42423011 |
T |
|
| Q |
301 |
ctacaagcaaaatataaaacaaaatcaatgcatttgcatctcctactataacagataaagctagtcttaggttctacggtaaaaataaagttgactctga |
400 |
Q |
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| T |
42423012 |
ctacaagcaaattataaaacaaaatcaatgcatttgaatctcctactataacagataaagctagtgttaggttctacggtaaaaataaagttgactctga |
42423111 |
T |
|
| Q |
401 |
atgagtttactgggcaacattaattccgactaaaagtgagttgaatataaagtggtttatgattgaacacgttcacataaaagtgggtt |
489 |
Q |
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| T |
42423112 |
atgagtttactgggcaacattaattccgactaaaagtgagttgaatataaagtggtttatgattgaacacgttcacgtaaaagtgggtt |
42423200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 423 - 451
Target Start/End: Original strand, 36447695 - 36447723
Alignment:
| Q |
423 |
attccgactaaaagtgagttgaatataaa |
451 |
Q |
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| T |
36447695 |
attccgactaaaagtgagttgaatataaa |
36447723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 431 - 467
Target Start/End: Original strand, 38510377 - 38510413
Alignment:
| Q |
431 |
taaaagtgagttgaatataaagtggtttatgattgaa |
467 |
Q |
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| T |
38510377 |
taaaagtgagttgaatataaagtgatttatgtttgaa |
38510413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 426 - 454
Target Start/End: Original strand, 7952665 - 7952693
Alignment:
| Q |
426 |
ccgactaaaagtgagttgaatataaagtg |
454 |
Q |
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| T |
7952665 |
ccgactaaaagtgagttgaatataaagtg |
7952693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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