View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12407_low_3 (Length: 489)
Name: NF12407_low_3
Description: NF12407
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12407_low_3 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 411; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 475
Target Start/End: Complemental strand, 24784306 - 24783832
Alignment:
| Q |
1 |
aatatgattgctaatgatgaaattcaaaaaggtaaaggtgcaaagcaagtgggcacaacccggagaggttgagatactcgatgaagctcnnnnnnnnaat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
24784306 |
aatatgattgctaatgatgaacttcaaaaaggtaaaggtgcaaatcaagtgggtacaacccggagaggttgagatactcgatgaagctctcttttttaat |
24784207 |
T |
|
| Q |
101 |
ccatttgtagcttaatgaaaatgtatgatgcaacctacactgttattgataatattattgatgaaggggctacttattctcaaagaggtaatgctttagc |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
24784206 |
ccatttgtagcttaatgaaaatgtatgatgcaacctacactgttattgataatattattgatgaaggggctacttattctcaaagaggtgatgctttagc |
24784107 |
T |
|
| Q |
201 |
tgctagtaaaatgttatcatcatttgaatttatttttatattatacttgatgtttgagaaaatgggaataaataatattctttgtcaagcattgcaatca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24784106 |
tgctagtaaaatgttatcatcatttgaatttatttttatattatacttgatgtttgagaaaatgggaataaataatattctttgtcaagcattgcaatca |
24784007 |
T |
|
| Q |
301 |
cgctctcaaaatattttaaatgcaatgcattttgtttctacttcaaaattacttcttcaacaattgaaaaatgatggatggtctaatttgctagaaaatg |
400 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
24784006 |
cgctctcaaaacattttaaatgcaatgcattttgtttctacttcaaaattacttcttcaacaactgaaaaatgatggatggtctaatttgctagaaaatg |
24783907 |
T |
|
| Q |
401 |
tgaaattgttttgtctaaaacgcgagatatagattccttacatgaatgggttgatatagggttgcaggttgtaat |
475 |
Q |
| |
|
||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
24783906 |
tgaaattgttttgtctaaaacacgagatatatattccttacatgagtgggttgatatagggttgtaggttgtaat |
24783832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 32824516 - 32824071
Alignment:
| Q |
1 |
aatatgattgctaatgatgaaattcaaaaaggtaaaggtgcaaagcaagtgggcacaacccggagaggttgagatactcgatgaagctcnnnnnnnnaat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||||||||||| |||||||| |||| ||| |||| | ||||||||||||| ||||| ||| |
|
|
| T |
32824516 |
aatatgattgctaatgatgaacttcaaacaggtaaaggtgcaaatcaagtgggtacaatccgaagagctggagatactcgatggagctctcattttcaat |
32824417 |
T |
|
| Q |
101 |
ccatttgtagcttaatgaaaatgtatgatgcaacctacactgttattgataatattattgatgaaggggctacttattctcaaagaggtaatgctttagc |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |
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|
| T |
32824416 |
ccatttatagcttaatgaaaatgtatgatgcagcctgcactgttattgataatattattgatgaaggggctacttattctcaaagaggtgatgcttctgc |
32824317 |
T |
|
| Q |
201 |
tgctagtaaaatgttat-catcatttgaatttatttttatattatacttgatgtttgagaaaatgggaataaataatattctttgtcaagcattgcaatc |
299 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||| ||| || ||||||||||| ||| |||||||| | ||||||||||||||||||||||||||| |
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|
| T |
32824316 |
tgctagtaaaatgatattcatcatttgaatttattttcatactacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaatc |
32824217 |
T |
|
| Q |
300 |
acgctctcaaaatattttaaatgcaatgcattttgtttctacttcaaaattacttcttcaacaattgaaaaatgatggatggtctaatttgctagaaaat |
399 |
Q |
| |
|
|||||||||| | |||||||||||||||||| |||||||||||||||||||||||||||| ||| ||| ||||||||||||| |||||||| |||||||| |
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|
| T |
32824216 |
acgctctcaagacattttaaatgcaatgcatcttgtttctacttcaaaattacttcttcagcaactgagaaatgatggatggcctaatttgttagaaaat |
32824117 |
T |
|
| Q |
400 |
gtgaaattgttttgtctaaaacgcgagatatagattccttacatga |
445 |
Q |
| |
|
|||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
32824116 |
gtgaaattgttttgtctaaaacatgagatagagattcctgacatga |
32824071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 30386144 - 30385696
Alignment:
| Q |
1 |
aatatgattgctaatgatgaaattcaaaaaggtaaaggtgcaaagcaagtgggcacaacccggagaggttgagatactcgatgaagctcnnnnnnnnaat |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| |||||||| ||| |||||||||| ||||||||||||| ||||| ||| |
|
|
| T |
30386144 |
aatatgattgctaatgatgaacttcaaacgggtaaaggtgcaaatcaagtgggtgcaatccggagaggtggagatactcgatggagctctcattttcaat |
30386045 |
T |
|
| Q |
101 |
ccatttgtagcttaatgaaaatgtatgatgcaacctacactgttattgataatattattgatgaaggggctacttattctcaaa----gaggtaatgctt |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||||||||| ||||| |||||| |
|
|
| T |
30386044 |
ccatttgtagcttaatgaaaatgtatgatgcagtctgcactgttattgataatgttattgatgaacgggctacttattctcaaataaagaggtgatgctt |
30385945 |
T |
|
| Q |
197 |
tagctgctagtaaaatgttatcatcatttgaatttatttttatattatacttgatgtttgagaaaatgggaataaataatattctttgtcaagcattgca |
296 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||| ||| |||||||| | |||||||||||||||||||||||| |
|
|
| T |
30385944 |
ctgctgctagtaaaatgctatcatcatttgaatttattttcatactacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgca |
30385845 |
T |
|
| Q |
297 |
atcacgctctcaaaatattttaaatgcaatgcattttgtttctacttcaaaattacttcttcaacaattgaaaaatgatggatggtctaatttgctagaa |
396 |
Q |
| |
|
||||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||| | | |||||||||||||||| ||||| ||||| |
|
|
| T |
30385844 |
atcacgctctcaagacattttaaatgcaatgcatcttgtttctacttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaa |
30385745 |
T |
|
| Q |
397 |
aatgtgaaattgttttgtctaaaacgcgagatatagattccttacatga |
445 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
30385744 |
aatgtgaaattgttttgtctaaaacatgagatagagattcctgacatga |
30385696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 98 - 445
Target Start/End: Complemental strand, 305229 - 304894
Alignment:
| Q |
98 |
aatccatttgtagcttaatgaaaatgtatgatgcaacctacactgttattgataatattattgatgaaggggctacttattctcaaagaggtaatgcttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
305229 |
aatccatttgtagcttaatgaaaatgtatgatgcagcctgcactgttattgat------------gaaggggctacttattctcaaagaggtgatgcttc |
305142 |
T |
|
| Q |
198 |
agctgctagtaaaatgttatcatcatttgaatttatttttatattatacttgatgtttgagaaaatgggaataaataatattctttgtcaagcattgcaa |
297 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||| ||| |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
305141 |
tgctgctagtaaaatgctatcatcatttgaatttattttcatactacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaa |
305042 |
T |
|
| Q |
298 |
tcacgctctcaaaatattttaaatgcaatgcattttgtttctacttcaaaattacttcttcaacaattgaaaaatgatggatggtctaatttgctagaaa |
397 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||| | | |||||||||||||||| ||||| |||||| |
|
|
| T |
305041 |
tcacgctctcaagacattttaaatgcaatgcatcttgtttctacttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaa |
304942 |
T |
|
| Q |
398 |
atgtgaaattgttttgtctaaaacgcgagatatagattccttacatga |
445 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
304941 |
atgtgaaattgttttgtctaaaacatgagatagagattcctgacatga |
304894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 98 - 445
Target Start/End: Original strand, 2828888 - 2829223
Alignment:
| Q |
98 |
aatccatttgtagcttaatgaaaatgtatgatgcaacctacactgttattgataatattattgatgaaggggctacttattctcaaagaggtaatgcttt |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
2828888 |
aatccatttgtagcttaatgaaaatgtatgatgcagcctgcactgttat------------tgatgaaggggctacttattctcaaagaggtgatgcttc |
2828975 |
T |
|
| Q |
198 |
agctgctagtaaaatgttatcatcatttgaatttatttttatattatacttgatgtttgagaaaatgggaataaataatattctttgtcaagcattgcaa |
297 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||| || ||||||||||| ||| |||||||| | ||||||||||||||||||||||||| |
|
|
| T |
2828976 |
tgctgctagtaaaatgctatcatcatttgaatttattttcatactacacttgatgtttaagatcatgggaatcactaatattctttgtcaagcattgcaa |
2829075 |
T |
|
| Q |
298 |
tcacgctctcaaaatattttaaatgcaatgcattttgtttctacttcaaaattacttcttcaacaattgaaaaatgatggatggtctaatttgctagaaa |
397 |
Q |
| |
|
|||||||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||| | | |||||||||||||||| ||||| |||||| |
|
|
| T |
2829076 |
tcacgctctcaagacattttaaatgcaatgcatcttgtttctacttcaaaagtacttcttcaacaactaagaaatgatggatggtctgatttgttagaaa |
2829175 |
T |
|
| Q |
398 |
atgtgaaattgttttgtctaaaacgcgagatatagattccttacatga |
445 |
Q |
| |
|
|||||||||||||||||||||||| |||||| |||||||| |||||| |
|
|
| T |
2829176 |
atgtgaaattgttttgtctaaaacatgagatagagattcctgacatga |
2829223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 305313 - 305247
Alignment:
| Q |
1 |
aatatgattgctaatgatgaaattcaaaaaggtaaaggtgcaaagcaagtgggcacaacccggagag |
67 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
305313 |
aatatgattgctaatgatgaacttcaaacgggtaaaggtgcaaatcaagtgggtacaatccggagag |
305247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 2828804 - 2828870
Alignment:
| Q |
1 |
aatatgattgctaatgatgaaattcaaaaaggtaaaggtgcaaagcaagtgggcacaacccggagag |
67 |
Q |
| |
|
||||||||||||||||||||| |||||| |||||||||||||| |||||||| |||| |||||||| |
|
|
| T |
2828804 |
aatatgattgctaatgatgaacttcaaacgggtaaaggtgcaaatcaagtgggtacaatccggagag |
2828870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17171968 - 17172025
Alignment:
| Q |
1 |
aatatgattgctaatgatgaaattcaaaaaggtaaaggtgcaaagcaagtgggcacaa |
58 |
Q |
| |
|
||||||||||||||||||||| || ||| ||||||||| ||| | |||||||| |||| |
|
|
| T |
17171968 |
aatatgattgctaatgatgaactttaaataggtaaaggggcagatcaagtgggtacaa |
17172025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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