View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12408_high_1 (Length: 251)
Name: NF12408_high_1
Description: NF12408
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12408_high_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 7 - 251
Target Start/End: Complemental strand, 7499321 - 7499077
Alignment:
| Q |
7 |
gcagcacagattctttaccagccaaaaactgaggatgatttttctttgcagcagtgctgaatcccataaaaacaagtgtctgattaacaaatgacatttg |
106 |
Q |
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| T |
7499321 |
gcagcacagattctttaccagccaaaaactgaggatgatttttctttgcagcagtgctgaatcccataaaaacaagtggctgattaacaaatgacatttg |
7499222 |
T |
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| Q |
107 |
agccattggatgaaacctaggcaccacaaaaacatctccttgctgaactctaaacctcttgtttttgcatttgtcatcattgttgcttccacataccact |
206 |
Q |
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| T |
7499221 |
agccattggatgaaacctaggcaccacaaaaacatctccttgctgaactctaaacctcttgtttttgcatttgtcatcattgttgcttccacataccact |
7499122 |
T |
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| Q |
207 |
cttaccattccttccccttccaacaccactgctacttctgttgcc |
251 |
Q |
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| T |
7499121 |
cttaccattccttccccttccaacaccactgctacttctgttgcc |
7499077 |
T |
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