View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12409_low_5 (Length: 354)
Name: NF12409_low_5
Description: NF12409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12409_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 296; Significance: 1e-166; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 33802561 - 33802223
Alignment:
| Q |
6 |
tgctatgttatttccactttccaacttgagctccagctagctttgttatattctttcttttcaaccgattccattttaaaaattccataattttgttcct |
105 |
Q |
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| T |
33802561 |
tgctatgttatttccactttccaacttgagcttcagctagctttgttatattctttcttttcaaccgattccattttaaaaattccataattttgttcct |
33802462 |
T |
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| Q |
106 |
tgtaaattcttccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802461 |
tgtaaattcttccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtc |
33802362 |
T |
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| Q |
206 |
caagccgtgtttatgtgatattcaatatattggcacaatctcacctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttcctt |
305 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
33802361 |
caaaccgtgtttatgtgatattcaatatattggcacaatctcacctgggatggaagcttctccaatgagtt---ttattgacgaaaagtcgaagttcctc |
33802265 |
T |
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| Q |
306 |
gtctcaaagaatagaaattttgcttttggttttgtcaccacc |
347 |
Q |
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| T |
33802264 |
gtctcaaaggatagaaattttgtttttggttttgtcaccacc |
33802223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 6 - 347
Target Start/End: Complemental strand, 33807043 - 33806705
Alignment:
| Q |
6 |
tgctatgttatttccactttccaacttgagctccagctagctttgttatattctttcttttcaaccgattccattttaaaaattccataattttgttcct |
105 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33807043 |
tgctatgttatttccactttccaacttgagcttcagctagctttgttatattctttcttttcaaccgattccattttaaaaattccataattttgttcct |
33806944 |
T |
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| Q |
106 |
tgtaaattcttccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtc |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33806943 |
tgtaaattcttccatgtagcaactaaaacatgggaacaaaacattggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtc |
33806844 |
T |
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| Q |
206 |
caagccgtgtttatgtgatattcaatatattggcacaatctcacctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttcctt |
305 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||| |
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| T |
33806843 |
caaaccgtgtttatgtgatattcaatatattggcacaatctcacctgggatggaagcttctccaatgagtt---ttattgacgaaaagtcgaagttcctc |
33806747 |
T |
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| Q |
306 |
gtctcaaagaatagaaattttgcttttggttttgtcaccacc |
347 |
Q |
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| T |
33806746 |
gtctcaaaggatagaaattttgtttttggttttgtcaccacc |
33806705 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 150 - 347
Target Start/End: Original strand, 33811405 - 33811599
Alignment:
| Q |
150 |
tggtttttatcctatgttgttgttggtcttttcatctccaccctattgatcatgtccaagccgtgtttatgtgatattcaatatattggcacaatctcac |
249 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
33811405 |
tggtttttatcctatgttgttgttggtctttccatctccaccctactgatcatgtccaaactgtgtttatgtgatattcaatatattggcacaatctcac |
33811504 |
T |
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| Q |
250 |
ctgggatggaaggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaagaatagaaattttgcttttggttttgtcaccacc |
347 |
Q |
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| T |
33811505 |
ctgggatggagggttctcaagcgaatt---ttattgacgaaggctcgaagttccttgtctcaaagaatagaaattttgcttttggttttgtcaccacc |
33811599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 60 - 340
Target Start/End: Original strand, 31026989 - 31027266
Alignment:
| Q |
60 |
ttcttttcaaccgattccattttaaaaattccataattttgttccttgtaaattcttccatgtagcaactaaaacatgggaacaaaacattggtttttat |
159 |
Q |
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|||||||||||| |||||| || | |||||||||| |||| |||||||||||| || | | |||| |||||||||||||||||| ||||||||||||| | |
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| T |
31026989 |
ttcttttcaaccaattccacttaacaaattccatagttttcttccttgtaaatcctacaaggtaggaactaaaacatgggaacacaacattggttttttt |
31027088 |
T |
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| Q |
160 |
cctatgttgttgttggtcttttcatctccaccctattgatcatgtccaagccgtgtttatgtgatattcaatatattggcacaatctcacctgggatgga |
259 |
Q |
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| T |
31027089 |
cgaatgttgtttatgttctgtccatctccatcctcttggtcatgtccaaactgtgtttgtgtgatattcaatatattggcacaatctcaccagggatgga |
31027188 |
T |
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| Q |
260 |
aggttctccaacgagttttattattgacgaaaattcgaagttccttgtctcaaagaatagaaattttgcttttggttttgt |
340 |
Q |
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|||||||| ||| | || | || ||| || | | |||||||| |||||||||||||| |||||||||||||||||| |
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| T |
31027189 |
aggttctcaaacaaatt---tcatcgacaaagacttcaagttcctcctctcaaagaatagagtttttgcttttggttttgt |
31027266 |
T |
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