View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12409_low_7 (Length: 342)
Name: NF12409_low_7
Description: NF12409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12409_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 10209655 - 10209968
Alignment:
| Q |
11 |
gaagcagagatacgaagggatatctagttcagcggccatgtcaaaggcatcggtaccaaataggtcgataatgagagcagaaagatggtgggaagtcatg |
110 |
Q |
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| T |
10209655 |
gaagtagagatacgaagggatatctagttcagcggccatgtcaaaggcatcggtaccaaataggtcgataatgagagcagagagacggtgggaagtcatg |
10209754 |
T |
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| Q |
111 |
agagagagtagggtttgatggagagaagggagagaacgaaggatggtggctatcatgagtggttcaggtttggtgttgggtgggatgtcggagagggtga |
210 |
Q |
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| T |
10209755 |
agagagagtagggtttgatggagagaagggagagaacgaaggatggtggctatcatgagtggttcaggtttggtgttgggtgggaggtcggagagggtga |
10209854 |
T |
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| Q |
211 |
ccggagggaggaagacgtgggaaatgccattaggtagggaggtgagtacggtggtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgat |
310 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10209855 |
ccggagggaggaagacgtgggaaatgccatgaggtagggaggtgagtacggttgtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgat |
10209954 |
T |
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| Q |
311 |
gggaaggttatgtt |
324 |
Q |
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|||||||||||||| |
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| T |
10209955 |
gggaaggttatgtt |
10209968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 11 - 324
Target Start/End: Original strand, 10202582 - 10202895
Alignment:
| Q |
11 |
gaagcagagatacgaagggatatctagttcagcggccatgtcaaaggcatcggtaccaaataggtcgataatgagagcagaaagatggtgggaagtcatg |
110 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||| |||| || || |||||||||| |||||||||||| ||| |||||||||||||| |
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| T |
10202582 |
gaagtagagatatgaagggatatctagttcagcggccatgtcaaagacatcagtgccgaataggtcgacaatgagagcagagagacggtgggaagtcatg |
10202681 |
T |
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| Q |
111 |
agagagagtagggtttgatggagagaagggagagaacgaaggatggtggctatcatgagtggttcaggtttggtgttgggtgggatgtcggagagggtga |
210 |
Q |
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||||||||||||||||||||||||||||||||||| |||| | |||||||| ||||||||| ||| ||||||||||||||||||| |||||||||||||| |
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| T |
10202682 |
agagagagtagggtttgatggagagaagggagagagcgaacggtggtggctgtcatgagtgtttcgggtttggtgttgggtgggaggtcggagagggtga |
10202781 |
T |
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| Q |
211 |
ccggagggaggaagacgtgggaaatgccattaggtagggaggtgagtacggtggtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgat |
310 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10202782 |
tcggaggaaggaagacgtgggaaatgccatgaggtagggaggtgagtacggtggtttgagcctttgaaggtggaccgtcgttggggatgatgaaggtgat |
10202881 |
T |
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| Q |
311 |
gggaaggttatgtt |
324 |
Q |
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|||||||||||||| |
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| T |
10202882 |
gggaaggttatgtt |
10202895 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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