View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12409_low_8 (Length: 320)
Name: NF12409_low_8
Description: NF12409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12409_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 135 - 297
Target Start/End: Complemental strand, 42685460 - 42685298
Alignment:
| Q |
135 |
aggataggtaattccaattttgaaagaaagcacctatgataccaattggtatatgttaagattgaaggaaaaatgcaattatagaacatgagatcacgag |
234 |
Q |
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| T |
42685460 |
aggataggtaattccaattttgaaagaaagcacctatgataccaattggtatatgttaagattgaaggaaaaatgcaattatagaacatgagatcacgag |
42685361 |
T |
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| Q |
235 |
agccaaacaagtttcaaggtttcaccatttagaaattccaattttttaggaaactctattatg |
297 |
Q |
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| T |
42685360 |
agccaaacaagtttgaaggtttcaccatttagaaattccaattttttaggaaactctattatg |
42685298 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 14 - 94
Target Start/End: Complemental strand, 42685581 - 42685501
Alignment:
| Q |
14 |
ttgataccattgttgggtagtttgaatgctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaac |
94 |
Q |
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| T |
42685581 |
ttgataccattgttggctagtttgaatgctggtgaaatgtaacttaggagacgaaagattgatgtcaagaaagaagaaaac |
42685501 |
T |
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