View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12409_low_9 (Length: 269)
Name: NF12409_low_9
Description: NF12409
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12409_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 40566779 - 40566544
Alignment:
| Q |
18 |
catgtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaa |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566779 |
catgtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaa |
40566680 |
T |
|
| Q |
118 |
ccacaaaagaataaccacagggattgaaatcatgtacgtctgagtgattgttgaatatacctgcagaagtataggccacttctctcaacacacgaccttg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40566679 |
ccacaaaagaataaccacagggattgaaatcatgtacgtctgagtgattgttgaatatacctgcagaagtataggccacttctctcaacacacgaccttg |
40566580 |
T |
|
| Q |
218 |
gggtattgaaatctcgcaacaaccagtacctgagca |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
40566579 |
gggtattgaaatctcgcaacaaccagtacctgagca |
40566544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 136
Target Start/End: Complemental strand, 40600791 - 40600679
Alignment:
| Q |
21 |
gtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaacca |
120 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| || || |||| |||||||||||| | ||||||||||||||||| |||||||| |
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| T |
40600791 |
gtttggttccctactgcccagtccaacaacacaggaaactccttgttattcaactt---gaggtctgtggaattgaagctgtaggctccatattcaacca |
40600695 |
T |
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| Q |
121 |
caaaagaataaccaca |
136 |
Q |
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|||||| ||||||||| |
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| T |
40600694 |
caaaagcataaccaca |
40600679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 21 - 164
Target Start/End: Complemental strand, 40589749 - 40589606
Alignment:
| Q |
21 |
gtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaacca |
120 |
Q |
| |
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|||||||| |||||||||||||| |||||||||||||| | ||||||||||| || |||||||||||| | |||| ||||| ||||||||||||| | |
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| T |
40589749 |
gtttggtttcctactgcccagtccaacaacacaggaaagttcttcttctttagcttggggaggtctgtggttgcgaaaatgtagtctccattttcaacaa |
40589650 |
T |
|
| Q |
121 |
caaaagaataaccacagggattgaaatcatgtacgtctgagtga |
164 |
Q |
| |
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|||| ||||||||| |||||||| |||| ||| |||||||| |
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| T |
40589649 |
taaaaacataaccacacggattgaagtcatatactgctgagtga |
40589606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 40596159 - 40596035
Alignment:
| Q |
21 |
gtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaacca |
120 |
Q |
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||||||||||||||||||||||| |||||||||||||| | | ||||||||| || ||||||||||| | | |||| ||||||||||||||| |||| |
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| T |
40596159 |
gtttggttccctactgcccagtccaacaacacaggaaagttcctcttctttagcttttggaggtctgtgattgcaaagcggtaggctccattttccacca |
40596060 |
T |
|
| Q |
121 |
caaaagaataaccacagggattgaa |
145 |
Q |
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||| | ||||||||| |||||||| |
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| T |
40596059 |
aaaacgtataaccacatggattgaa |
40596035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 40571475 - 40571329
Alignment:
| Q |
18 |
catgtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaa |
117 |
Q |
| |
|
||||||||||| ||||||| ||||| |||||||||||||||||||| ||||| |||| |||||||||| | |||||||||| ||||||||||| |
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| T |
40571475 |
catgtttggtttcctactgtccagttcaacaacacaggaaactccttattcttcaacttgaggaggtctgatcgtgttaagctgtaggatccattttcaa |
40571376 |
T |
|
| Q |
118 |
ccacaaaagaataaccacagggattgaaatcatgtacgtctgagtga |
164 |
Q |
| |
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|| ||||| ||| ||||| |||||||| |||||||| | ||||||| |
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| T |
40571375 |
tcaaaaaagcatagccacatggattgaagtcatgtacttttgagtga |
40571329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 154
Target Start/End: Complemental strand, 40577898 - 40577765
Alignment:
| Q |
18 |
catgtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctg-tggattcgaagctgtaggctccattttca |
116 |
Q |
| |
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|||||||| || |||||| |||||| |||||||||||||||||||||||| | ||| | |||||||| | | || ||||||||| ||||||| || |
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| T |
40577898 |
catgtttgatttcctactttccagtccaacaacacaggaaactccttcttcatcaac---atgaggtctgatcgtgtc-aagctgtagtttccatttgca |
40577803 |
T |
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| Q |
117 |
accacaaaagaataaccacagggattgaaatcatgtac |
154 |
Q |
| |
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|||| ||||||||||||||| |||||||| |||||||| |
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| T |
40577802 |
accaaaaaagaataaccacatggattgaagtcatgtac |
40577765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 181 - 241
Target Start/End: Complemental strand, 40595996 - 40595936
Alignment:
| Q |
181 |
cagaagtataggccacttctctcaacacacgaccttggggtattgaaatctcgcaacaacc |
241 |
Q |
| |
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||||| ||||||| ||||| | ||||||||||||| ||||||||||||||| |||||||| |
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| T |
40595996 |
cagaaatataggcaacttccgtaaacacacgacctttgggtattgaaatctcacaacaacc |
40595936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 2016898 - 2017130
Alignment:
| Q |
21 |
gtttggttccctactgcccagtcgaacaacacaggaaactccttcttctttaactcaaggaggtctgtggattcgaagctgtaggctccattttcaacca |
120 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |||||||| ||||||||||| ||||||||||||||||||| | |
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| T |
2016898 |
gtttggttccctactgcccagtccaacaacacaggaaattccttcttctccaacttgaggaggtccgtggattcgaaagtgtaggctccattttcaacaa |
2016997 |
T |
|
| Q |
121 |
caaaagaataaccacagggattgaaatcatgtacgtctgagtgattgttgaatatacctgcagaagtataggccacttctctc-aacacacgaccttggg |
219 |
Q |
| |
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||||| ||||||||| |||||||| |||||||| ||||||||||||||||| |||| ||| | | ||| ||||| |||| |||| | ||||||| | |
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| T |
2016998 |
aaaaagcataaccacaaggattgaagtcatgtactgctgagtgattgttgaatgcacctacagtaacaaaggacactt-tctcgaacaaatgaccttgcg |
2017096 |
T |
|
| Q |
220 |
gtattgaaatctcgcaacaaccagtacctgagca |
253 |
Q |
| |
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|||||||||||| ||||||||||| || ||||| |
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|
| T |
2017097 |
gtattgaaatctgacaacaaccagtgccggagca |
2017130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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