View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_high_1 (Length: 784)
Name: NF1240_high_1
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 529; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 73 - 755
Target Start/End: Original strand, 7221692 - 7222376
Alignment:
| Q |
73 |
gagtgagatgaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattga |
172 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7221692 |
gagtgagaagaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattga |
7221791 |
T |
|
| Q |
173 |
tttccttgttgccatgtatagccatgttgcagcccacattagctcatcctatatataagcatcacattaatttaattaattcactcttagtgaattagga |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7221792 |
tttccttgttgccatgtatagccatgttgcagcccacattaactcatcctatatataagcatcacattaatttaattaattcactcttagtgaattaaga |
7221891 |
T |
|
| Q |
273 |
aaggttaattataagagtgattacatacattatagcctgaataggagcagtag-agggacattctccatcataggttcctttatgagattttgccaattc |
371 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
7221892 |
aaggttaattataagagtgattacatacattatagcctgaataggagcagtagaagggacattctccatcataggttcctttatgagatcttgccaattc |
7221991 |
T |
|
| Q |
372 |
gaaaagctgccaggaaattgtgagaaataaattaagctttcatattcccaaccaatactattggttacttcaatnnnnnnnnnnnnnnnnnnnnctacaa |
471 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
7221992 |
gaaaagctgccaggaaattgtgagaaataaattaagctttcatattcccaaccaatactattggttacttcaat----aaaaaaaaaatatatactacaa |
7222087 |
T |
|
| Q |
472 |
gctacaaatgtgcatttttctatacatgtaattggtatattgtctagatttaaatataag-----cnnnnnnnnngtacttatttttcataccaattttg |
566 |
Q |
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| T |
7222088 |
gctacaaatgtgcatttttctatacatgtaattggtatattgtctaggtttaaatataagaagaagaaaaaaaaagaacttatttttcataccaattttg |
7222187 |
T |
|
| Q |
567 |
ctttattgaggagacggcgagcatatttaggatcaacatgcctaaaaacaatggaagaagcagccatagcagcagaagtttcagctgcaatctcagtacc |
666 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
7222188 |
ctttattgaggagacggcgagaatatttgggatcaacatgcctaaaaacaatggaagaagcagccatagcagcagaagtttcagctgcaatctcagtgcc |
7222287 |
T |
|
| Q |
667 |
aggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggtgcccaacaatggtgatcatcaactgggtccc |
755 |
Q |
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| T |
7222288 |
aggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggtgcccaacaatggtgatcatcaactgggtccc |
7222376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 555 - 755
Target Start/End: Original strand, 48526791 - 48526991
Alignment:
| Q |
555 |
ataccaattttgctttattgaggagacggcgagcatatttaggatcaacatgcctaaaaacaatggaagaagcagccatagcagcagaagtttcagctgc |
654 |
Q |
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|||||||||||||||| ||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||| ||||||||| |||| ||||||| || |
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| T |
48526791 |
ataccaattttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaagaagccatagctgcagccgtttcagaagc |
48526890 |
T |
|
| Q |
655 |
aatctcagtaccaggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggtgcccaacaatggtgatcatcaactgggtcc |
754 |
Q |
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||||||| |||||||||||||||||||||| | |||||| | ||| ||||||||||| ||||| ||||| ||||||||||| ||||| || |||||||| |
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| T |
48526891 |
aatctcactaccaggtgtgttactatcaatgactttaaccgatctttttgtcttcattttttctggtggagcccaacaatgatgatcttcctctgggtcc |
48526990 |
T |
|
| Q |
755 |
c |
755 |
Q |
| |
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| |
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| T |
48526991 |
c |
48526991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 73 - 210
Target Start/End: Original strand, 48526290 - 48526427
Alignment:
| Q |
73 |
gagtgagatgaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattga |
172 |
Q |
| |
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|||||||| |||||||||||||||| |||||||| ||||||||||||||||||||| |||||||||||| |||||||||||| || |||||||||| || |
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| T |
48526290 |
gagtgagaagaacttgaactccagcgtatttaagatcccaactgaattctgctacattagcactaattgattcttcttgtatatatttcatgtacaacga |
48526389 |
T |
|
| Q |
173 |
tttccttgttgccatgtatagccatgttgcagcccaca |
210 |
Q |
| |
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|||| ||||||||||||||||||| ||||| ||||||| |
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| T |
48526390 |
tttctttgttgccatgtatagccaagttgctgcccaca |
48526427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 281 - 391
Target Start/End: Original strand, 48526544 - 48526655
Alignment:
| Q |
281 |
ttataagagtgattacatacattatagcctgaataggagcagtagag-ggacattctccatcataggttcctttatgagattttgccaattcgaaaagct |
379 |
Q |
| |
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|||||||||| || |||||| ||||||||||||||||||||||||| || |||||||||||||| ||||||||||| ||||||||||| |||||||||| |
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| T |
48526544 |
ttataagagtaataacatacgttatagcctgaataggagcagtagaaagggcattctccatcatatgttcctttatgtgattttgccaaatcgaaaagct |
48526643 |
T |
|
| Q |
380 |
gccaggaaattg |
391 |
Q |
| |
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|||||||||||| |
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| T |
48526644 |
gccaggaaattg |
48526655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 123; Significance: 9e-63; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 9e-63
Query Start/End: Original strand, 561 - 755
Target Start/End: Complemental strand, 50305553 - 50305359
Alignment:
| Q |
561 |
attttgctttattgaggagacggcgagcatatttaggatcaacatgcctaaaaacaatggaagaagcagccatagcagcagaagtttcagctgcaatctc |
660 |
Q |
| |
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||||||||||||| |||||| | |||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
50305553 |
attttgctttattaaggagatgacgagcatatttacgatcaacatgtctaaaaacaatggaagaagtagccataacagcagaagtttcagctgcaatctt |
50305454 |
T |
|
| Q |
661 |
agtaccaggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggtgcccaacaatggtgatcatcaactgggtccc |
755 |
Q |
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| ||| ||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |||||| |
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| T |
50305453 |
aaaaccgggtgtgttactgtcaattaatttatatgttctctttgtcttcatactttctggtggtgcccaacaacggtgatcatcaactcggtccc |
50305359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 72 - 229
Target Start/End: Complemental strand, 50306651 - 50306490
Alignment:
| Q |
72 |
cgagtgagatgaacttgaactccagcatatttaaggtcccaactgaattctgctacactagcactaattgcttcttcttgtatgtacttcatgtacattg |
171 |
Q |
| |
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||||||||| ||||||||||||| |||||||||||||||| || ||| | | |||||||||||||||||||||||||||||| |||||||||||||| | |
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| T |
50306651 |
cgagtgagaagaacttgaactccgacatatttaaggtcccagctaaataccgttacactagcactaattgcttcttcttgtatatacttcatgtacatag |
50306552 |
T |
|
| Q |
172 |
atttccttgttgccat----gtatagccatgttgcagcccacattagctcatcctatatata |
229 |
Q |
| |
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|||| | ||||||||| ||||||||||||||| |||||||||||||||||||||||||| |
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| T |
50306551 |
attttcctgttgccatgtatgtatagccatgttgctgcccacattagctcatcctatatata |
50306490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 328 - 417
Target Start/End: Complemental strand, 50305766 - 50305677
Alignment:
| Q |
328 |
ggacattctccatcataggttcctttatgagattttgccaattcgaaaagctgccaggaaattgtgagaaataaattaagctttcatatt |
417 |
Q |
| |
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|||||||||||||||||||||||||||||| || |||||||||| ||||| || ||| |||||| |||||||||||||||| ||||||| |
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| T |
50305766 |
ggacattctccatcataggttcctttatgaaatcttgccaattcaaaaagttgtcagaaaattggaagaaataaattaagctatcatatt |
50305677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 247 - 326
Target Start/End: Complemental strand, 50306448 - 50306369
Alignment:
| Q |
247 |
attaattcactcttagtgaattaggaaaggttaattataagagtgattacatacattatagcctgaataggagcagtaga |
326 |
Q |
| |
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|||| ||||||| |||||||||| ||| |||| ||||||| |||||||||||||||||||||||||| | || ||||||| |
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| T |
50306448 |
attatttcactcgtagtgaattaagaacggttgattataaaagtgattacatacattatagcctgaacacgaacagtaga |
50306369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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