View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_high_15 (Length: 443)
Name: NF1240_high_15
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_15 |
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Alignment Details
Target: chr1 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 38814267 - 38813832
Alignment:
| Q |
1 |
aaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38814267 |
aaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaa |
38814168 |
T |
|
| Q |
101 |
ttctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaat |
200 |
Q |
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| T |
38814167 |
ttctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaattaagcagtgatttgtggacagaatcatatgcccaactctcaaagcaat |
38814068 |
T |
|
| Q |
201 |
tgaaaccatttaggtgaatgataagacacgagtgtccatcacagagctgcagggttgcacatttggatttggtaactgttcctggctccgtgccatgtaa |
300 |
Q |
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| T |
38814067 |
tgaaaccatttaggtgaatgataagacacgagtgtccatcacagaactgcagtgttgcacatttggatttggtaactgttcctggctccgtgccatgtaa |
38813968 |
T |
|
| Q |
301 |
cagaagccattcagcatcaagcccgataactttggttcgatgactgttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggat |
400 |
Q |
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| T |
38813967 |
cagaagccattcagcatcaagcccgataactttggttcgatgattgttagaacgatgcaagaacgatcttatatgattctcaatcttttgctcatcggat |
38813868 |
T |
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| Q |
401 |
gttgctcgagtcttgatgtgtactccattcatctca |
436 |
Q |
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| T |
38813867 |
gttgctctggtcttgatgtgtactccattcagctca |
38813832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 38818667 - 38818506
Alignment:
| Q |
1 |
aaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaa |
100 |
Q |
| |
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|||||||||| ||||| || |||| ||| | ||||| || || |||||||| ||||||||||||||||||| ||||| | | |||||||| |||| | |
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| T |
38818667 |
aaaactcaaacgaggcttcctcatgacagtagcagctaacgggccaagttccacagcatttctacatccaatcccatagtatgtttccaacttggccaca |
38818568 |
T |
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| Q |
101 |
ttctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaattaagcagtga |
162 |
Q |
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| T |
38818567 |
ttgtctttgattccaactccaacaaaggtaacatttggcatacgaagaaagttaagtagtga |
38818506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 38820893 - 38820731
Alignment:
| Q |
1 |
aaaactcaaatgaggcctcttcataacacttgcagcaaagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaacttagccaaa |
100 |
Q |
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|||||||||| |||| ||||| ||||||| ||||| |||||||||||||| ||||||||||| |||| || ||||| | |||||| | ||||||||| |
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| T |
38820893 |
aaaactcaaactaggcatcttcctaacactagcagccaagggtccaagttccacagcatttctgcatctaaccccatattccttctcaagtttagccaaa |
38820794 |
T |
|
| Q |
101 |
ttctctttgattccaactccaacaaatgtaacatttgggagacgaagaaaattaagcagtgat |
163 |
Q |
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|| | ||||| ||||| |||||||| ||| || ||| ||||||||||||||||||| |||| |
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| T |
38820793 |
ttatgattgataccaacaccaacaaaggtataatctggaagacgaagaaaattaagcaatgat |
38820731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 90
Target Start/End: Original strand, 11386781 - 11386833
Alignment:
| Q |
38 |
aagggtccaagttcaacagcatttctacatccaaatccatactgcttctccaa |
90 |
Q |
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||||||||||||||||| |||||||| ||||||| |||| ||||||||||| |
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| T |
11386781 |
aagggtccaagttcaactgcatttctgcatccaatcccatgatgcttctccaa |
11386833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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