View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_high_24 (Length: 382)
Name: NF1240_high_24
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_24 |
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Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 9 - 370
Target Start/End: Original strand, 47812572 - 47812933
Alignment:
| Q |
9 |
gaataattgcagcatacttattgagtagaggcagcggttcactattcaaagtgagtgctctttttgacttattaaacacaaaacatctccaaaccctttg |
108 |
Q |
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| T |
47812572 |
gaataattgcagcatacttattgagtagaggcagaggttcactgttcaaagtgagtgctctttttgacttattaaacacaaaacatctctaaaccctttg |
47812671 |
T |
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| Q |
109 |
tcccacacattatcccgattccacgtatcaaatattcctatgtatttttaaattaagtgtatgtttggattgacggtgagtttgacaaaatgacaatgat |
208 |
Q |
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| T |
47812672 |
tcccacacattatcccgattccacgtatcaaatattcctatgtatttttaaattaagtgtatgtttggattgacggtgagtttgacaaaatgacaatgat |
47812771 |
T |
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| Q |
209 |
atcagctttttgtagaagctcaagcataatcatctgtctatttgattaatcattaatgtgtatttgatgctgaaagcacattctcttctaatgaacaagt |
308 |
Q |
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| T |
47812772 |
atcagctttttgtagaagctcaagcataatcatctgtctatttgattaatcattaatgtgtatttgatgctgaaagcacattctcttctaatgaacaagt |
47812871 |
T |
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| Q |
309 |
ttattcacttcccatacgagcttgtagaggggaaacacctcgttaccaataaactgcatatt |
370 |
Q |
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| T |
47812872 |
ttattcacttcccatacgagcttgtagaggggaaacacctcgttaccaatacactgcatatt |
47812933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 199
Target Start/End: Original strand, 1905611 - 1905645
Alignment:
| Q |
165 |
gtgtatgtttggattgacggtgagtttgacaaaat |
199 |
Q |
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| T |
1905611 |
gtgtctgtttggattgacggtgagtttgacaaaat |
1905645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 29670691 - 29670655
Alignment:
| Q |
164 |
agtgtatgtttggattgacggtgagtttgacaaaatg |
200 |
Q |
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| T |
29670691 |
agtgtatgtttggattcacggtgagtttgacagaatg |
29670655 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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