View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_high_31 (Length: 347)

Name: NF1240_high_31
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_high_31
NF1240_high_31
[»] chr3 (1 HSPs)
chr3 (223-341)||(47451470-47451588)
[»] chr4 (10 HSPs)
chr4 (223-341)||(45365790-45365908)
chr4 (223-301)||(49043778-49043856)
chr4 (223-291)||(49038498-49038566)
chr4 (223-342)||(48870933-48871052)
chr4 (223-342)||(48876237-48876356)
chr4 (223-289)||(7790453-7790519)
chr4 (223-341)||(7908675-7908793)
chr4 (223-341)||(48899113-48899231)
chr4 (223-287)||(48886619-48886683)
chr4 (223-291)||(48147333-48147401)
[»] chr2 (1 HSPs)
chr2 (190-222)||(42462582-42462614)


Alignment Details
Target: chr3 (Bit Score: 103; Significance: 3e-51; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 47451588 - 47451470
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccctctcattacttttaccccttaacctctacaaa 322  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  47451588 tgatgaaagaatacaaagttaattcgtcttgggaaaagactcttgttcttcctattgatggcattccctctcagtacttttaccccttaacctctacaaa 47451489  T
Q  323 aagtggtgatattgttgga 341  Q
    ||||||||||||| |||||    
T  47451488 aagtggtgatattattgga 47451470  T

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Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 223 - 341
Target Start/End: Complemental strand, 45365908 - 45365790
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccctctcattacttttaccccttaacctctacaaa 322  Q
    ||||||||||||| |||||   ||||||||||  || |||||  |||||| ||||||||||||||||| |||| ||||||| ||| |||  |||||||||    
T  45365908 tgatgaaagaatataaagtgcgttcgtcttggacaaagactcacgttcttcctattgatggcattcccactcaatacttttcccctttatgctctacaaa 45365809  T
Q  323 aagtggtgatattgttgga 341  Q
    ||| ||||||||| |||||    
T  45365808 aagcggtgatattattgga 45365790  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 223 - 301
Target Start/End: Complemental strand, 49043856 - 49043778
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccctctcattactt 301  Q
    |||||||||||||||||||  ||||||| |||   | |||||||||| |||||||||||| ||||||| ||||||||||    
T  49043856 tgatgaaagaatacaaagtgcattcgtcatggactaagactcttgttttttctattgatgtcattcccactcattactt 49043778  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 49038566 - 49038498
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccct 291  Q
    |||||||||||||||||||| |||||||||||   | |||||||||||| ||||||  |||||||||||    
T  49038566 tgatgaaagaatacaaagttcattcgtcttggactaagactcttgttctgtctattagtggcattccct 49038498  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 342
Target Start/End: Original strand, 48870933 - 48871052
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccctctcattacttttaccccttaacctctacaaa 322  Q
    ||||||| ||||||||||| || |||||||||  || |||||||||||||||| |||||| |||| ||  | | | ||||| ||| ||   || ||||||    
T  48870933 tgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaa 48871032  T
Q  323 aagtggtgatattgttggag 342  Q
    ||||||||||||| ||||||    
T  48871033 aagtggtgatattattggag 48871052  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 342
Target Start/End: Original strand, 48876237 - 48876356
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccctctcattacttttaccccttaacctctacaaa 322  Q
    ||||||| ||||||||||| || |||||||||  || |||||||||||||||| |||||| |||| ||  | | | ||||| ||| ||   || ||||||    
T  48876237 tgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatttccgatgagtccttttccccattgtgctgtacaaa 48876336  T
Q  323 aagtggtgatattgttggag 342  Q
    ||||||||||||| ||||||    
T  48876337 aagtggtgatattattggag 48876356  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 7790453 - 7790519
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattcc 289  Q
    |||||||||||||||||||  |||||||||||   |  |||||||||||||||||||||| ||||||    
T  7790453 tgatgaaagaatacaaagtgcattcgtcttggactaaaactcttgttctttctattgatgccattcc 7790519  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 341
Target Start/End: Original strand, 7908675 - 7908793
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccctctcattacttttaccccttaacctctacaaa 322  Q
    |||||||||||||||||||  |||| |||||| | |  ||||||||||||||| |||||| ||||||   ||| |||||| ||||  ||  |||||||||    
T  7908675 tgatgaaagaatacaaagtgcattcatcttggaataaaactcttgttctttctgttgatgccattcctgatcactactttcaccctatacactctacaaa 7908774  T
Q  323 aagtggtgatattgttgga 341  Q
    ||  ||||||||| |||||    
T  7908775 aaacggtgatattattgga 7908793  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 341
Target Start/End: Original strand, 48899113 - 48899231
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccctctcattacttttaccccttaacctctacaaa 322  Q
    ||||||||||||| ||||| || || ||||||  |  ||||||||||||| ||||||||||||||||| ||   ||||||||||| ||   || ||||||    
T  48899113 tgatgaaagaatataaagtaaaatcctcttggacagtgactcttgttcttcctattgatggcattcccactatgtacttttacccattgtgctgtacaaa 48899212  T
Q  323 aagtggtgatattgttgga 341  Q
    ||||||  ||||| |||||    
T  48899213 aagtggctatattattgga 48899231  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 223 - 287
Target Start/End: Original strand, 48886619 - 48886683
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcatt 287  Q
    ||||||| ||||||||||| || |||||||||  || |||||||||||||||| |||||| ||||    
T  48886619 tgatgaatgaatacaaagtgaactcgtcttggacaaagactcttgttctttctgttgatgacatt 48886683  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 48147401 - 48147333
Alignment:
Q  223 tgatgaaagaatacaaagttaattcgtcttgggaaaggactcttgttctttctattgatggcattccct 291  Q
    |||||||||||||||||||  |||||||||||   | |||||||  | | |||||||||||||||||||    
T  48147401 tgatgaaagaatacaaagtgcattcgtcttggactaagactcttaatttgtctattgatggcattccct 48147333  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 190 - 222
Target Start/End: Complemental strand, 42462614 - 42462582
Alignment:
Q  190 ttatctgcatgtgcatttgttttcttccctaaa 222  Q
    |||||||||||||||||||||||||||||||||    
T  42462614 ttatctgcatgtgcatttgttttcttccctaaa 42462582  T

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