View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_high_43 (Length: 285)

Name: NF1240_high_43
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_high_43
NF1240_high_43
[»] chr5 (8 HSPs)
chr5 (10-285)||(28344333-28344608)
chr5 (224-282)||(24106199-24106257)
chr5 (57-102)||(23921230-23921275)
chr5 (228-281)||(41417760-41417813)
chr5 (228-275)||(17151859-17151906)
chr5 (224-285)||(40715956-40716017)
chr5 (225-285)||(20175821-20175881)
chr5 (225-285)||(32200454-32200514)
[»] chr3 (4 HSPs)
chr3 (51-122)||(11174755-11174826)
chr3 (51-122)||(14456687-14456758)
chr3 (222-277)||(38387963-38388018)
chr3 (229-275)||(22365970-22366016)
[»] chr2 (7 HSPs)
chr2 (225-275)||(26999104-26999154)
chr2 (224-285)||(30243243-30243304)
chr2 (225-277)||(2783001-2783053)
chr2 (225-282)||(11931599-11931656)
chr2 (225-274)||(22571883-22571932)
chr2 (253-285)||(12994496-12994528)
chr2 (225-285)||(44694682-44694742)
[»] chr8 (6 HSPs)
chr8 (225-274)||(32223897-32223946)
chr8 (58-102)||(17826340-17826384)
chr8 (222-270)||(35061627-35061675)
chr8 (225-281)||(40468967-40469023)
chr8 (223-275)||(37015853-37015905)
chr8 (225-273)||(42200681-42200729)
[»] chr4 (6 HSPs)
chr4 (225-278)||(12712032-12712085)
chr4 (224-281)||(36720671-36720728)
chr4 (231-275)||(27871395-27871439)
chr4 (225-277)||(8494981-8495033)
chr4 (257-285)||(23686306-23686334)
chr4 (231-275)||(27655731-27655775)
[»] chr1 (6 HSPs)
chr1 (224-285)||(28979283-28979344)
chr1 (225-285)||(26010216-26010276)
chr1 (226-278)||(34516050-34516102)
chr1 (224-277)||(34632162-34632215)
chr1 (225-285)||(11462929-11462989)
chr1 (225-285)||(27533237-27533297)
[»] chr6 (2 HSPs)
chr6 (229-285)||(4826288-4826344)
chr6 (225-277)||(8809300-8809352)
[»] chr7 (1 HSPs)
chr7 (230-285)||(2962733-2962788)
[»] scaffold0045 (1 HSPs)
scaffold0045 (229-281)||(42216-42268)


Alignment Details
Target: chr5 (Bit Score: 173; Significance: 5e-93; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 28344333 - 28344608
Alignment:
Q  10 aataatatatagatagaagaaagagaaaacaaaacaaaggaggacataaaccaaaacctcctaacaattcacaaacctaaaatttggtaaccctagccta 109  Q
    ||||||||||||||  ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  28344333 aataatatatagatgaaagaa-gagaaaacaaaacaaaggaggacataaaccaaaacctcctaacatttcacaaacctaaaatttggtaaccctagccta 28344431  T
Q  110 ttatgaacatagaatctatacctgtaacaacaaaaattgtaaatctccatctacaaagaaatataa-nnnnnnnncttgttttactattcatatgctttt 208  Q
    ||||||||||| ||||||||||||||||||  ||| ||||||||||||||||||||| ||||||||         ||||||||||||||| ||| |||||    
T  28344432 ttatgaacataaaatctatacctgtaacaaagaaatttgtaaatctccatctacaaaaaaatataattttttcttcttgttttactattcctatcctttt 28344531  T
Q  209 gaaagacaacatcatagtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    |||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||||||||||||| || ||||||    
T  28344532 gaaagacaacatcatagtcctcgtaagcttagttcagttgaaagggacaatgtataatatatgcaaggtttggggtt 28344608  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 24106257 - 24106199
Alignment:
Q  224 agtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggg 282  Q
    ||||||||| |||||||||||||||| ||| |||||| |||||||||| ||||||||||    
T  24106257 agtcctcgtaaacttagttcaattgacagaaacaatgcataatatatgtaagattcggg 24106199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 23921230 - 23921275
Alignment:
Q  57 aaaccaaaacctcctaacaattcacaaacctaaaatttggtaaccc 102  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||    
T  23921230 aaaccaaaacctcctaaaaattaacaaacctaaaattgggtaaccc 23921275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 41417760 - 41417813
Alignment:
Q  228 ctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcgg 281  Q
    ||||||||||||||||| |||  || || |||||||||||||||||||||||||    
T  41417760 ctcgtgaacttagttcagttggtagggataatgtataatatatgcaagattcgg 41417813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 228 - 275
Target Start/End: Complemental strand, 17151906 - 17151859
Alignment:
Q  228 ctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaag 275  Q
    ||||||| ||||||||| |||  |||||||||||||||||||||||||    
T  17151906 ctcgtgagcttagttcagttgctagagacaatgtataatatatgcaag 17151859  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 40716017 - 40715956
Alignment:
Q  224 agtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    ||||||||||| ||||| |||||||| |  ||||||| |||||||||||||| | |||||||    
T  40716017 agtcctcgtgagcttagctcaattgatatggacaatgcataatatatgcaaggtccggggtt 40715956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 20175821 - 20175881
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    |||||||||| ||||  ||| |||  |||||||||| |||| |||||||||||||||||||    
T  20175821 gtcctcgtgagcttaactcagttgttagagacaatgcataaaatatgcaagattcggggtt 20175881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 32200514 - 32200454
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    |||||||||| ||||| ||| |||| || ||||||| |||||||||||||| | |||||||    
T  32200514 gtcctcgtgagcttagctcagttgacagggacaatgcataatatatgcaaggtccggggtt 32200454  T

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Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 11174755 - 11174826
Alignment:
Q  51 ggacataaaccaaaacctcctaacaattcacaaacctaaaatttggtaaccctagcctattatgaacataga 122  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||||  ||||||||| |||| ||||||    
T  11174755 ggacaaaaaccaaaacctcctaacaatttacaaacctaaaatttggtaattctagcctatcatgaccataga 11174826  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 51 - 122
Target Start/End: Original strand, 14456687 - 14456758
Alignment:
Q  51 ggacataaaccaaaacctcctaacaattcacaaacctaaaatttggtaaccctagcctattatgaacataga 122  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||||| ||| ||||||| |||| ||||||    
T  14456687 ggacaaaaaccaaaacctcctaacaatttacaaacctaaaatttggtagcccaagcctatcatgaccataga 14456758  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 222 - 277
Target Start/End: Original strand, 38387963 - 38388018
Alignment:
Q  222 atagtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagat 277  Q
    ||||||||||||| ||||| ||| |||| || ||||||| ||||||||||||||||    
T  38387963 atagtcctcgtgagcttagctcagttgatagtgacaatgcataatatatgcaagat 38388018  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 229 - 275
Target Start/End: Original strand, 22365970 - 22366016
Alignment:
Q  229 tcgtgaacttagttcaattgaaagagacaatgtataatatatgcaag 275  Q
    |||||||||||||||| |||| | ||| |||||||||||||||||||    
T  22365970 tcgtgaacttagttcagttgataaagataatgtataatatatgcaag 22366016  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 275
Target Start/End: Original strand, 26999104 - 26999154
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaag 275  Q
    |||||||||||||||||||| |||  |||||||||| ||||||||||||||    
T  26999104 gtcctcgtgaacttagttcagttggtagagacaatgcataatatatgcaag 26999154  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 285
Target Start/End: Original strand, 30243243 - 30243304
Alignment:
Q  224 agtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    ||||||||||||||||| ||| |||  |||||||||| ||||||||| |||| |||||||||    
T  30243243 agtcctcgtgaacttagctcagttggtagagacaatgcataatatatacaaggttcggggtt 30243304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 2783001 - 2783053
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagat 277  Q
    |||||||||| ||||||||| |||  ||||| |||||||||||||||||||||    
T  2783001 gtcctcgtgagcttagttcagttggtagagataatgtataatatatgcaagat 2783053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 282
Target Start/End: Original strand, 11931599 - 11931656
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggg 282  Q
    |||||||||| ||||||| |||||  || ||||||| |||||||||||||||| ||||    
T  11931599 gtcctcgtgagcttagtttaattggtagggacaatgcataatatatgcaagatccggg 11931656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 22571932 - 22571883
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaa 274  Q
    |||||||||||||||| ||| |||| | |||||||| |||||||||||||    
T  22571932 gtcctcgtgaacttagctcagttgatatagacaatgcataatatatgcaa 22571883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 253 - 285
Target Start/End: Complemental strand, 12994528 - 12994496
Alignment:
Q  253 agacaatgtataatatatgcaagattcggggtt 285  Q
    ||||||||||||||||||||||||||| |||||    
T  12994528 agacaatgtataatatatgcaagattcagggtt 12994496  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 44694682 - 44694742
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    |||||||||||||||  ||| |||| | |||||||| ||||||||||||||  ||||||||    
T  44694682 gtcctcgtgaacttaactcagttgatatagacaatgcataatatatgcaaggctcggggtt 44694742  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 32223946 - 32223897
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaa 274  Q
    |||||||||| ||||||||| |||| |||||||||| |||||||||||||    
T  32223946 gtcctcgtgagcttagttcagttgatagagacaatgcataatatatgcaa 32223897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 17826340 - 17826384
Alignment:
Q  58 aaccaaaacctcctaacaattcacaaacctaaaatttggtaaccc 102  Q
    |||||||||||||||| |||| |||||||||||||| ||||||||    
T  17826340 aaccaaaacctcctaaaaattaacaaacctaaaattgggtaaccc 17826384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 270
Target Start/End: Original strand, 35061627 - 35061675
Alignment:
Q  222 atagtcctcgtgaacttagttcaattgaaagagacaatgtataatatat 270  Q
    ||||||||||||| |||||||||||||| |||||||||  |||||||||    
T  35061627 atagtcctcgtgagcttagttcaattgatagagacaatacataatatat 35061675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 40468967 - 40469023
Alignment:
Q  225 gtcctcgtgaacttagttcaatt-gaaagagacaatgtataatatatgcaagattcgg 281  Q
    |||||||||||||||||||| || | ||| ||| ||||||||||||||||||||||||    
T  40468967 gtcctcgtgaacttagttcagtttgtaag-gacgatgtataatatatgcaagattcgg 40469023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 275
Target Start/End: Complemental strand, 37015905 - 37015853
Alignment:
Q  223 tagtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaag 275  Q
    |||||||||||| ||||| ||| |||  |||||||||| ||||||||||||||    
T  37015905 tagtcctcgtgagcttagctcagttggtagagacaatgcataatatatgcaag 37015853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 273
Target Start/End: Complemental strand, 42200729 - 42200681
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgca 273  Q
    |||||||||| ||||| ||| |||| || ||||||||||||||||||||    
T  42200729 gtcctcgtgagcttagctcagttgatagggacaatgtataatatatgca 42200681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 225 - 278
Target Start/End: Complemental strand, 12712085 - 12712032
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagatt 278  Q
    |||||||||||||||  ||| |||| |||||||||| |||||||||||||||||    
T  12712085 gtcctcgtgaacttaactcatttgatagagacaatgcataatatatgcaagatt 12712032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 281
Target Start/End: Original strand, 36720671 - 36720728
Alignment:
Q  224 agtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcgg 281  Q
    ||||||||||||||||  |||||||  ||  |||||||||||||||||||||||||||    
T  36720671 agtcctcgtgaacttaactcaattggtaggaacaatgtataatatatgcaagattcgg 36720728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 231 - 275
Target Start/End: Complemental strand, 27871439 - 27871395
Alignment:
Q  231 gtgaacttagttcaattgaaagagacaatgtataatatatgcaag 275  Q
    |||||||||| ||| |||| |||||||||||||||||||||||||    
T  27871439 gtgaacttagctcatttgatagagacaatgtataatatatgcaag 27871395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 8494981 - 8495033
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagat 277  Q
    |||||||||||||||| ||| |||  || ||||||| ||||||||||||||||    
T  8494981 gtcctcgtgaacttagctcagttggtagggacaatgcataatatatgcaagat 8495033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 285
Target Start/End: Complemental strand, 23686334 - 23686306
Alignment:
Q  257 aatgtataatatatgcaagattcggggtt 285  Q
    |||||||||||||||||||||||||||||    
T  23686334 aatgtataatatatgcaagattcggggtt 23686306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 231 - 275
Target Start/End: Original strand, 27655731 - 27655775
Alignment:
Q  231 gtgaacttagttcaattgaaagagacaatgtataatatatgcaag 275  Q
    |||||||||||||| |||| ||| |||||| ||||||||||||||    
T  27655731 gtgaacttagttcagttgatagaaacaatgcataatatatgcaag 27655775  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 285
Target Start/End: Complemental strand, 28979344 - 28979283
Alignment:
Q  224 agtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    ||||||| ||||||||| ||| |||| ||||| |||| ||||||||||||||||||| ||||    
T  28979344 agtcctcctgaacttagctcatttgatagagataatgcataatatatgcaagattcgaggtt 28979283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 26010216 - 26010276
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    ||||||||||  |||| |||||||| || |||||||||||||| ||||||| |||||||||    
T  26010216 gtcctcgtgagtttagctcaattgatagtgacaatgtataatacatgcaaggttcggggtt 26010276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 34516102 - 34516050
Alignment:
Q  226 tcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagatt 278  Q
    |||| |||| ||||||||| |||| |||||||||| |||||||||||||||||    
T  34516102 tccttgtgagcttagttcagttgacagagacaatgaataatatatgcaagatt 34516050  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 34632162 - 34632215
Alignment:
Q  224 agtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagat 277  Q
    ||||||||||| ||||| ||| |||  | |||||||||||||||||||||||||    
T  34632162 agtcctcgtgagcttagctcagttggtatagacaatgtataatatatgcaagat 34632215  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Complemental strand, 11462989 - 11462929
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    |||||||||||||||||||  |||  |||||||||| |||| ||||||||| | |||||||    
T  11462989 gtcctcgtgaacttagttcggttgctagagacaatgcataaaatatgcaaggtccggggtt 11462929  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 27533237 - 27533297
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    |||||||||| ||||| ||| |||  || ||||||| |||||||||||||| |||||||||    
T  27533237 gtcctcgtgagcttagatcagttggtagggacaatgcataatatatgcaaggttcggggtt 27533297  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 285
Target Start/End: Original strand, 4826288 - 4826344
Alignment:
Q  229 tcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    ||||||||||||||||||||  |||||||||| |||||||||| ||| |||| ||||    
T  4826288 tcgtgaacttagttcaattggtagagacaatgcataatatatgtaaggttcgaggtt 4826344  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 277
Target Start/End: Original strand, 8809300 - 8809352
Alignment:
Q  225 gtcctcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagat 277  Q
    ||||||||||  ||||||||||||| | | |||||| ||||||||||||||||    
T  8809300 gtcctcgtgagtttagttcaattgataaaaacaatgcataatatatgcaagat 8809352  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 285
Target Start/End: Complemental strand, 2962788 - 2962733
Alignment:
Q  230 cgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcggggtt 285  Q
    |||||||||||||||||||  | ||| |||| |||||||||||||| |||||||||    
T  2962788 cgtgaacttagttcaattggtaaagataatgcataatatatgcaaggttcggggtt 2962733  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 281
Target Start/End: Original strand, 42216 - 42268
Alignment:
Q  229 tcgtgaacttagttcaattgaaagagacaatgtataatatatgcaagattcgg 281  Q
    ||||||||||| || | |||| ||||| ||||||||||||||||||| |||||    
T  42216 tcgtgaacttaatttagttgatagagataatgtataatatatgcaaggttcgg 42268  T

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