View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_high_44 (Length: 278)
Name: NF1240_high_44
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_44 |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 8269972 - 8270187
Alignment:
| Q |
1 |
cttttgccaacatagtaatataataatgcacctctttaatatatagagcctagacctctgttcctttgccttgttaaggaacctcttcttcaagcttgaa |
100 |
Q |
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| T |
8269972 |
cttttgccaacatagtaatataataatgcacctctttaatatatagagcctagacctctgttcctttgccttgttaaggaacctcttcttcaagcttgaa |
8270071 |
T |
|
| Q |
101 |
gcatgttcaacacaacgattttgttgtgttgaagttgaagttgaagtggttgaaaaacaatgatccatgttatgtggtgggtgtccttaattaatttaat |
200 |
Q |
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| T |
8270072 |
gcatgttcaacacaacgattttgttgt------gttgaagttgaagtggttgaaaaacaatgatccatgttatgtggtgggtgtccttaattaatttatt |
8270165 |
T |
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| Q |
201 |
ttttgttgaagtgggtctaaga |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
8270166 |
ttttgttgaagtgggtctaaga |
8270187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 5 - 100
Target Start/End: Original strand, 55245601 - 55245696
Alignment:
| Q |
5 |
tgccaacatagtaatataataatgcacctctttaatatatagagcctagacctctgttcctttgccttgttaaggaacctcttcttcaagcttgaa |
100 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| |||||||| ||||||| ||| || || | || |||||||||||||||||||||||| |
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| T |
55245601 |
tgccaacatagtaacataataatgcacctctttagtatgtagagcctggacctctcttctttagctctcttgaggaacctcttcttcaagcttgaa |
55245696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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