View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_high_45 (Length: 278)

Name: NF1240_high_45
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_high_45
NF1240_high_45
[»] chr2 (11 HSPs)
chr2 (175-272)||(8885244-8885341)
chr2 (1-64)||(3309177-3309240)
chr2 (1-64)||(10237021-10237084)
chr2 (4-64)||(3460521-3460581)
chr2 (10-64)||(14955770-14955824)
chr2 (3-64)||(3465569-3465630)
chr2 (6-64)||(14416392-14416450)
chr2 (6-59)||(28533764-28533817)
chr2 (41-73)||(8885439-8885471)
chr2 (6-64)||(6358686-6358744)
chr2 (10-64)||(19595704-19595758)
[»] chr7 (12 HSPs)
chr7 (2-64)||(48930932-48930994)
chr7 (1-64)||(35133171-35133234)
chr7 (6-59)||(25068286-25068339)
chr7 (6-57)||(28476455-28476506)
chr7 (6-59)||(3876061-3876114)
chr7 (6-59)||(11344038-11344091)
chr7 (22-64)||(31481902-31481944)
chr7 (6-64)||(46821556-46821614)
chr7 (1-32)||(22743168-22743199)
chr7 (13-59)||(38880433-38880479)
chr7 (6-64)||(46822547-46822605)
chr7 (20-64)||(11654043-11654087)
[»] chr5 (7 HSPs)
chr5 (1-64)||(28540710-28540773)
chr5 (2-64)||(19103271-19103333)
chr5 (1-64)||(14211448-14211511)
chr5 (1-59)||(2979115-2979173)
chr5 (4-64)||(39567494-39567554)
chr5 (6-59)||(38110819-38110872)
chr5 (9-59)||(35920805-35920855)
[»] chr1 (9 HSPs)
chr1 (1-64)||(48750410-48750473)
chr1 (1-64)||(36775514-36775577)
chr1 (1-37)||(34412923-34412959)
chr1 (6-47)||(30712122-30712163)
chr1 (1-64)||(13075460-13075523)
chr1 (10-59)||(31692276-31692325)
chr1 (6-63)||(50616480-50616537)
chr1 (6-63)||(50624307-50624364)
chr1 (21-57)||(16162074-16162110)
[»] chr8 (6 HSPs)
chr8 (1-64)||(14585901-14585964)
chr8 (1-64)||(18890501-18890564)
chr8 (1-64)||(42046445-42046508)
chr8 (10-59)||(43833803-43833852)
chr8 (1-64)||(41896741-41896803)
chr8 (6-64)||(8868037-8868095)
[»] chr3 (15 HSPs)
chr3 (1-64)||(16235647-16235710)
chr3 (1-64)||(21289618-21289681)
chr3 (1-64)||(27706030-27706093)
chr3 (2-64)||(51923949-51924011)
chr3 (4-64)||(8914936-8914996)
chr3 (4-59)||(7546840-7546895)
chr3 (9-64)||(53508451-53508506)
chr3 (1-64)||(42460970-42461033)
chr3 (6-64)||(27856391-27856449)
chr3 (6-59)||(52115826-52115879)
chr3 (10-64)||(41818445-41818499)
chr3 (1-54)||(51487303-51487356)
chr3 (19-59)||(32246650-32246690)
chr3 (6-56)||(52497038-52497088)
chr3 (11-64)||(1650176-1650229)
[»] chr4 (18 HSPs)
chr4 (2-64)||(27652186-27652248)
chr4 (1-64)||(1621315-1621378)
chr4 (1-64)||(18936024-18936087)
chr4 (1-64)||(33332394-33332457)
chr4 (9-64)||(37465723-37465778)
chr4 (1-63)||(22038614-22038676)
chr4 (1-64)||(31891087-31891154)
chr4 (6-64)||(36161958-36162016)
chr4 (6-64)||(2069390-2069443)
chr4 (6-59)||(48351003-48351056)
chr4 (4-64)||(36194953-36195013)
chr4 (9-64)||(6155024-6155079)
chr4 (1-64)||(9714152-9714214)
chr4 (9-64)||(37684103-37684158)
chr4 (29-64)||(47158453-47158488)
chr4 (1-59)||(7393440-7393498)
chr4 (10-64)||(43853694-43853748)
chr4 (6-60)||(55656635-55656689)
[»] scaffold0888 (1 HSPs)
scaffold0888 (1-64)||(1482-1545)
[»] chr6 (8 HSPs)
chr6 (6-57)||(8102954-8103005)
chr6 (6-64)||(14802056-14802114)
chr6 (1-57)||(30776886-30776942)
chr6 (2-64)||(546255-546317)
chr6 (1-64)||(679331-679394)
chr6 (9-64)||(31851696-31851751)
chr6 (1-57)||(6957364-6957420)
chr6 (1-37)||(29743223-29743259)
[»] scaffold0021 (1 HSPs)
scaffold0021 (6-64)||(4373-4431)


Alignment Details
Target: chr2 (Bit Score: 98; Significance: 3e-48; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 175 - 272
Target Start/End: Complemental strand, 8885341 - 8885244
Alignment:
Q  175 gtatttcaatctcaaggacacactaatctcgtttcacaccaacgttttcgtacacctctcaatttcctaaaagagatctcaaccgttttgtttcttag 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8885341 gtatttcaatctcaaggacacactaatctcgtttcacaccaacgttttcgtacacctctcaatttcctaaaagagatctcaaccgttttgtttcttag 8885244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 3309177 - 3309240
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  3309177 ccctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatg 3309240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 10237084 - 10237021
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  10237084 ccctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatg 10237021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 3460521 - 3460581
Alignment:
Q  4 tatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||    
T  3460521 tatacgtttttagcgatattgatcatgttattgtctctgatatattctatcaatttgaatg 3460581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 14955770 - 14955824
Alignment:
Q  10 tttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  14955770 tttttagcgatattgatcatgttattgtctcttatgtattctatcaatttaaatg 14955824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 3 - 64
Target Start/End: Original strand, 3465569 - 3465630
Alignment:
Q  3 ctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||| ||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||    
T  3465569 ctatatgtttttagcaatattgatcatgttattgtctctgatatattctatcaatttaaatg 3465630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 14416392 - 14416450
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||| |||||||| |||| ||||||||||| | ||||||||||||||||||| ||||    
T  14416392 tacgttgttagcgatgttgaacatgttattgtatctgatgtattctatcaatttgaatg 14416450  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 28533817 - 28533764
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||||||| |||| |||||||||||||||  | |||||||||||||||||||    
T  28533817 tacgtttttaacgatgttgatcatgttattgaatctgatgtattctatcaattt 28533764  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 73
Target Start/End: Complemental strand, 8885471 - 8885439
Alignment:
Q  41 tgatgtattctatcaatttaaatgtttatatat 73  Q
    |||||||||||||||||||||||||||||||||    
T  8885471 tgatgtattctatcaatttaaatgtttatatat 8885439  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 6358744 - 6358686
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||  ||||||||||| |||||||| | |||||||||| |||||||| ||||    
T  6358744 tacgtttttaatgatattgatcaagttattgtatctgatgtattccatcaatttgaatg 6358686  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Complemental strand, 19595758 - 19595704
Alignment:
Q  10 tttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||| |||||||||||||||| | |||| |||| ||||||||| ||||    
T  19595758 tttttagcgatcttgatcatgttattgtatctgatatattatatcaatttgaatg 19595704  T

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Target: chr7 (Bit Score: 59; Significance: 5e-25; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 48930932 - 48930994
Alignment:
Q  2 cctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  48930932 cctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttaaatg 48930994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 35133171 - 35133234
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  35133171 ccctatacgtttttaacgatattgatcatgttattgtctctgatgtattctatcaatttgaatg 35133234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 25068286 - 25068339
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    ||||||||||||||||||||| |||||||||| | |||||||||||||||||||    
T  25068286 tacgtttttagcgatattgatgatgttattgtttctgatgtattctatcaattt 25068339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 28476455 - 28476506
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaat 57  Q
    |||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  28476455 tacgtttttagcaatattgatcatgttattatctctgatgtattctatcaat 28476506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 3876114 - 3876061
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    ||||||||||  |||||||||||||||||||| | |||||||||||||||||||    
T  3876114 tacgtttttaatgatattgatcatgttattgtatttgatgtattctatcaattt 3876061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Original strand, 11344038 - 11344091
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    ||||||||||||||| |||||||||||||||| | ||||||||| |||||||||    
T  11344038 tacgtttttagcgatgttgatcatgttattgtatctgatgtattatatcaattt 11344091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 31481944 - 31481902
Alignment:
Q  22 ttgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||| ||||||||||||||||||||| ||||    
T  31481944 ttgatcatgttattgtatatgatgtattctatcaatttgaatg 31481902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 46821614 - 46821556
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||| |||| |||||||||||||||  |||||| |||||||| ||||||||||    
T  46821614 tacgtttttaacgatgttgatcatgttattgcatatgatatattctattaatttaaatg 46821556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 22743168 - 22743199
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgtt 32  Q
    ||||||||||||||||||||||||||||||||    
T  22743168 ccctatacgtttttagcgatattgatcatgtt 22743199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 38880479 - 38880433
Alignment:
Q  13 ttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    ||||||||||||||||||||||| | | |||||||||||| ||||||    
T  38880479 ttagcgatattgatcatgttattatatctgatgtattctaacaattt 38880433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 46822605 - 46822547
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||| ||||||| |||||||||||||||| | | ||| ||||||||||||| ||||    
T  46822605 tacgtttgtagcgatgttgatcatgttattgtatctaatgcattctatcaatttgaatg 46822547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 64
Target Start/End: Original strand, 11654043 - 11654087
Alignment:
Q  20 tattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||| |||||||||| | ||||||||||||||||||| ||||    
T  11654043 tattgatgatgttattgtatttgatgtattctatcaatttgaatg 11654087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 28540773 - 28540710
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  28540773 ccctatacgtttttagcgatattgatcatgttattgtctttgatgtattttatcaatttaaatg 28540710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 2 - 64
Target Start/End: Complemental strand, 19103333 - 19103271
Alignment:
Q  2 cctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  19103333 cctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatg 19103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14211448 - 14211511
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| ||||    
T  14211448 ccctatacgtttttagcgatattgatcatgctattgtctatgatgtattatatcaatttgaatg 14211511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2979173 - 2979115
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  2979173 ccctatacatttttagcgatattgatcatgttattgtttctgatgtattctatcaattt 2979115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 39567494 - 39567554
Alignment:
Q  4 tatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||| ||||    
T  39567494 tatacgtttttagtgatattgatcatgttattgtctttgatgtattatatcaatttgaatg 39567554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 38110872 - 38110819
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    ||||||||||| ||| ||||||| ||| |||| |||||||||||||||||||||    
T  38110872 tacgtttttagtgatgttgatcacgttgttgtatatgatgtattctatcaattt 38110819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 59
Target Start/End: Complemental strand, 35920855 - 35920805
Alignment:
Q  9 gtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    ||||||||||| ||||||||||| ||||| | ||||||||| |||||||||    
T  35920855 gtttttagcgacattgatcatgtgattgtatctgatgtattatatcaattt 35920805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 3e-23; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 48750410 - 48750473
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  48750410 ccctatacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaatttgaatg 48750473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 36775577 - 36775514
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||    
T  36775577 ccctatacgtttttagcgatattgatcatgttattgtctctgatgtattcaatcaatttgaatg 36775514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34412959 - 34412923
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  34412959 ccctatacgtttttagcgatattgatcatgttattgt 34412923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 30712163 - 30712122
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgta 47  Q
    |||||||||||||||||||| ||||||||||| |||||||||    
T  30712163 tacgtttttagcgatattgaacatgttattgtatatgatgta 30712122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 13075523 - 13075460
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||| ||| ||||||||||||||||| |||||||||| | | || ||||||||||| |||||||    
T  13075523 ccctttacttttttagcgatattgattatgttattgtatctaatatattctatcaacttaaatg 13075460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 31692325 - 31692276
Alignment:
Q  10 tttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||| |||| ||||||||||||||   |||||||||||||||||||||    
T  31692325 tttttaacgatgttgatcatgttattacatatgatgtattctatcaattt 31692276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 50616537 - 50616480
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaat 63  Q
    |||||||||||| || |||||||||||||| | | | ||||||| |||||||||||||    
T  50616537 tacgtttttagcaatgttgatcatgttattatatctaatgtattttatcaatttaaat 50616480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 50624364 - 50624307
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaat 63  Q
    |||||||||||| || |||||||||||||| | | | ||||||| |||||||||||||    
T  50624364 tacgtttttagcaatgttgatcatgttattatatctaatgtattttatcaatttaaat 50624307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 57
Target Start/End: Original strand, 16162074 - 16162110
Alignment:
Q  21 attgatcatgttattgtctatgatgtattctatcaat 57  Q
    ||||||||| ||||||||| |||||||||||||||||    
T  16162074 attgatcatattattgtctctgatgtattctatcaat 16162110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 14585901 - 14585964
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||    
T  14585901 ccctatacgtttttagcgatattgatcatgttattatctctgatgtattctatcaatttgaatg 14585964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 18890564 - 18890501
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  18890564 ccctatccgtttttagcgatattaatcatgttattgtctctgatgtattctatcaatttgaatg 18890501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42046445 - 42046508
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||||||  |||||||||||||| |||| ||||    
T  42046445 ccctatacgtttttagcgatattgatcatgttattgtcactgatgtattctatcgatttgaatg 42046508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 43833852 - 43833803
Alignment:
Q  10 tttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43833852 tttttagcgatattgatcatgttattgtctttgatgtattctatcaattt 43833803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 41896741 - 41896803
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||| |||||||||||||||||| || ||||||||||||||||||| ||||    
T  41896741 ccctatacgtttttagcaatattgatcatgttattg-ctctgatgtattctatcaatttgaatg 41896803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 8868037 - 8868095
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||| || |||||||||||||||| | ||||||||||||||||||| ||||    
T  8868037 tacgtttttagcaatgttgatcatgttattgtatctgatgtattctatcaatttgaatg 8868095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 16235647 - 16235710
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  16235647 ccctatacgtttttagcgatattgatcatattattgtctctgatgtattctatcaatttgaatg 16235710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 21289681 - 21289618
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  21289681 ccctatacgtttttagcgatattgatcatgttattgtctctgatgcattctatcaatttgaatg 21289618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 27706093 - 27706030
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  27706093 ccctatacgtttttagcgatatcgatcatgttattgtctctgatgtattctatcaatttgaatg 27706030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 51923949 - 51924011
Alignment:
Q  2 cctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||    
T  51923949 cctatacgtttttagcgatattgatcatgttattgtctctgatgcattctatcaatttgaatg 51924011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 8914936 - 8914996
Alignment:
Q  4 tatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||    
T  8914936 tatacgtttttagcgatattgatgatgttattgtctctgatgtattctatcaatttgaatg 8914996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 7546840 - 7546895
Alignment:
Q  4 tatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  7546840 tatacgtttttagcgatattgatcatgtcattgtctttgatgtattttatcaattt 7546895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 53508451 - 53508506
Alignment:
Q  9 gtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||    
T  53508451 gtttttagcgatattgatcatgttattgtatctgatgtattctatcaaattaaatg 53508506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 42460970 - 42461033
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||| ||| ||| |||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  42460970 ccctttacatttatagcgatattgatcatgttattgtctctgatgtattctgtcaatttgaatg 42461033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 27856391 - 27856449
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||||| | |||||| || ||||||||| ||||    
T  27856391 tacgtttttagcgatattgatcatgttattgtgtctgatgtgttttatcaatttgaatg 27856449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 52115879 - 52115826
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||||||||||||||  |||||||||||||||  ||||||||||||||||||    
T  52115879 tacgtttttagcgatatcaatcatgttattgtctccgatgtattctatcaattt 52115826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 41818445 - 41818499
Alignment:
Q  10 tttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||| || |||||||| ||| ||||||||||||||||||| ||||    
T  41818445 tttttagcgatattaatgatgttattatctctgatgtattctatcaatttgaatg 41818499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51487303 - 51487356
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatc 54  Q
    |||| |||||||||||||||||| ||||||||||| ||| | ||||||||||||    
T  51487303 ccctttacgtttttagcgatattaatcatgttattatctctaatgtattctatc 51487356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 32246650 - 32246690
Alignment:
Q  19 atattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  32246650 atattgatcatgttattgtacatgatgtattctatcaattt 32246690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 56
Target Start/End: Complemental strand, 52497088 - 52497038
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaa 56  Q
    |||||||||| |||||||||| |||||| ||| ||||||||||| ||||||    
T  52497088 tacgtttttaacgatattgattatgttaatgtatatgatgtattttatcaa 52497038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 11 - 64
Target Start/End: Original strand, 1650176 - 1650229
Alignment:
Q  11 ttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||| ||  ||||||| ||||||||| |||||||||| |||||    
T  1650176 ttttagcgatattgaacaaattattgtatatgatgtactctatcaattcaaatg 1650229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 27652186 - 27652248
Alignment:
Q  2 cctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||    
T  27652186 cctatacgtttttagcgatatcgatcatgttattgtctttgatgtattctatcaatttgaatg 27652248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1621378 - 1621315
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||| ||||| ||||    
T  1621378 ccctatacgtttttagcaatattgatcatgttattgtctctgatgtattctataaatttgaatg 1621315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 18936024 - 18936087
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||    
T  18936024 ccctatatgtttttagcgatattgatcatgctattgtctctgatgtattctatcaatttgaatg 18936087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 33332457 - 33332394
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||| |||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||    
T  33332457 ccctttacgtttttagcgatattgatcatattattgtctctgatgtattctatcaatttgaatg 33332394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 37465723 - 37465778
Alignment:
Q  9 gtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||| |||| |||||||||||||||| | ||||||||||||||||||||||||    
T  37465723 gtttttaacgatgttgatcatgttattgtatctgatgtattctatcaatttaaatg 37465778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 22038676 - 22038614
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaat 63  Q
    |||| ||||||||||||||| |  ||||||||||||| | |||||||||||||||||||||||    
T  22038676 ccctttacgtttttagcgatgtatatcatgttattgtatttgatgtattctatcaatttaaat 22038614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 31891154 - 31891087
Alignment:
Q  1 ccctatacgtttttagcgatattgatc----atgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||    ||||| |||||| ||||||||||||||||||| ||||    
T  31891154 ccctatacgtttttagcgatattgatcgatcatgtttttgtctctgatgtattctatcaatttgaatg 31891087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 36161958 - 36162016
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||| |||| |||||||||||||||| | ||||||||||||||||||| ||||    
T  36161958 tacgtttttaacgatgttgatcatgttattgtatttgatgtattctatcaatttgaatg 36162016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 2069443 - 2069390
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||||      ||||||||||||||||||||||    
T  2069443 tacgtttttagcgatattgatcatgttattg-----catgtattctatcaatttaaatg 2069390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 6 - 59
Target Start/End: Complemental strand, 48351056 - 48351003
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||||| |||||||| |||||||||| ||||| | |||||||||||||||||||    
T  48351056 tacgttattagcgatgttgatcatgtcattgtatctgatgtattctatcaattt 48351003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 64
Target Start/End: Original strand, 36194953 - 36195013
Alignment:
Q  4 tatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||| |||||||| |||||||||| ||||||| | | ||||||||||||||||||| ||||    
T  36194953 tatatgtttttagtgatattgatcgtgttattatgtctgatgtattctatcaatttgaatg 36195013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 6155079 - 6155024
Alignment:
Q  9 gtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||| |||||||| ||||||| | | ||||||||||||||||| ||||    
T  6155079 gtttttagcgatgttgatcattttattgtatctaatgtattctatcaatttgaatg 6155024  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 9714152 - 9714214
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||| |||||||||| |||| ||||||| |||||||||| | ||||||||||||||||| ||||    
T  9714152 ccctttacgtttttaacgat-ttgatcaggttattgtcttttatgtattctatcaatttgaatg 9714214  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Original strand, 37684103 - 37684158
Alignment:
Q  9 gtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||| ||| ||||||||||||| |||||| | | ||||||||||||||||||||||    
T  37684103 gtttatagagatattgatcatgatattgtatctcatgtattctatcaatttaaatg 37684158  T

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Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 47158453 - 47158488
Alignment:
Q  29 tgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||| ||||||||||||||||||||||||    
T  47158453 tgttattgtctgtgatgtattctatcaatttaaatg 47158488  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7393440 - 7393498
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattt 59  Q
    |||| ||| ||||||||||||||||||||  |||||| | |||| ||||||||||||||    
T  7393440 ccctttacatttttagcgatattgatcataatattgtatctgatatattctatcaattt 7393498  T

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Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 43853694 - 43853748
Alignment:
Q  10 tttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||| ||||  |||||||||| | ||||||||||||||||||| ||||    
T  43853694 tttttagcgatgttgagtatgttattgtatctgatgtattctatcaatttgaatg 43853748  T

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Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 55656635 - 55656689
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaattta 60  Q
    |||||||||||| || |||||||||||||||  | | ||||||||||||||||||    
T  55656635 tacgtttttagctatgttgatcatgttattgcatctaatgtattctatcaattta 55656689  T

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Target: scaffold0888 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 1545 - 1482
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||| || |||||||||||||||||||||| ||||||||||||||||||| ||||    
T  1545 ccctatacgttttaagggatattgatcatgttattgtctctgatgtattctatcaatttgaatg 1482  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 8102954 - 8103005
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaat 57  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8102954 tacgtttttagcgatattgatcatgttattgtctctgatgtattctatcaat 8103005  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 14802056 - 14802114
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||    
T  14802056 tacgtttttagcgatattaatcatgttattgtctctgatgtattctatcaatttgaatg 14802114  T

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Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 30776886 - 30776942
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaat 57  Q
    |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  30776886 ccctttacgtttttagcgatattgatcatgttattgtctctgacgtattctatcaat 30776942  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 546255 - 546317
Alignment:
Q  2 cctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||||||||||||||||||||| ||||| | |||| |||||||||||||| ||||    
T  546255 cctatacgtttttagcgatattgatcatgtcattgtgtctgatatattctatcaatttgaatg 546317  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 679331 - 679394
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||| |||||||||||| || ||||| |||||||||| | ||||||||||||||||||| ||||    
T  679331 ccctttacgtttttagcaatgttgattatgttattgtatctgatgtattctatcaatttgaatg 679394  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 64
Target Start/End: Complemental strand, 31851751 - 31851696
Alignment:
Q  9 gtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    |||||||||||| |||||| ||||||||  | ||||||||||||||||||| ||||    
T  31851751 gtttttagcgatgttgatcttgttattgcatctgatgtattctatcaatttgaatg 31851696  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6957364 - 6957420
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaat 57  Q
    |||| ||||||||||||||| |||| ||| ||||||| | ||||||| |||||||||    
T  6957364 ccctttacgtttttagcgatgttgaacatattattgtatttgatgtactctatcaat 6957420  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29743223 - 29743259
Alignment:
Q  1 ccctatacgtttttagcgatattgatcatgttattgt 37  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  29743223 ccctttacgtttttagcgatattgatgatgttattgt 29743259  T

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Target: scaffold0021 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 4373 - 4431
Alignment:
Q  6 tacgtttttagcgatattgatcatgttattgtctatgatgtattctatcaatttaaatg 64  Q
    ||||||||||||||||||||| |||||||||| | ||||||||| ||||||||| ||||    
T  4373 tacgtttttagcgatattgatgatgttattgtatctgatgtattttatcaatttgaatg 4431  T

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