View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_high_47 (Length: 266)
Name: NF1240_high_47
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_47 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 14 - 266
Target Start/End: Complemental strand, 23339482 - 23339230
Alignment:
| Q |
14 |
agacagcaacaaaaagtgcaaatgcatgtgatagtgatgcagctaccaaccctgctggtgttgctgcaccattgtttgtaagcttatctgtcaaaaacat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339482 |
agacagcaacaaaaagtgcaaatgcatgtgatagtgatgcagctaccaaccctgctggtgttgctgcaccattgtttgtaagcttatctgtcaaaaacat |
23339383 |
T |
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| Q |
114 |
aaagttacactcaaacatgtttggaaaaacagttcaattaagcgtttatagcataaatatttatcatataaaagaatgttttcatataactaaaggaaat |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23339382 |
aaagttacactcaaacatgtttggaaaaacagttcaattaagcgtttatagcataaatatttatcatataaaagaatgttttcatataactaaaggaaat |
23339283 |
T |
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| Q |
214 |
gagcttataccggttttaaaaatgtttacgtcagtagataaactcaaataaat |
266 |
Q |
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| T |
23339282 |
gagcttataccggttttaaaaatgtttacgtcagtagataaactcaaataaat |
23339230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 133 - 181
Target Start/End: Original strand, 25497457 - 25497505
Alignment:
| Q |
133 |
tttggaaaaacagttcaattaagcgtttatagcataaatatttatcata |
181 |
Q |
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| T |
25497457 |
tttggataaacagatcaattaagcgcttatagcataaacgtttatcata |
25497505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 179
Target Start/End: Original strand, 39505840 - 39505886
Alignment:
| Q |
133 |
tttggaaaaacagttcaattaagcgtttatagcataaatatttatca |
179 |
Q |
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| T |
39505840 |
tttggataaacagctcaattaagcatttatagcataaatgtttatca |
39505886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 753393 - 753340
Alignment:
| Q |
131 |
tgtttggaaaaacagttcaattaagcgtttatagcataaatatttatcatataa |
184 |
Q |
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|||||||| ||||| | ||||||| |||||||||||||| ||||||||||||| |
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| T |
753393 |
tgtttggataaacaacttaattaagtgtttatagcataaacatttatcatataa |
753340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 131 - 181
Target Start/End: Complemental strand, 13869284 - 13869234
Alignment:
| Q |
131 |
tgtttggaaaaacagttcaattaagcgtttatagcataaatatttatcata |
181 |
Q |
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|||||||| |||||| ||||||||||| |||||||||||| | |||||||| |
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| T |
13869284 |
tgtttggataaacagctcaattaagcgcttatagcataaacacttatcata |
13869234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 131 - 184
Target Start/End: Complemental strand, 13244670 - 13244617
Alignment:
| Q |
131 |
tgtttggaaaaacagttcaattaagcgtttatagcataaatatttatcatataa |
184 |
Q |
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|||||||| |||||||| |||| ||||||||||||||||| ||||||||||| |
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| T |
13244670 |
tgtttggataaacagttaaattgagcgtttatagcataaacgcttatcatataa |
13244617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 129 - 181
Target Start/End: Complemental strand, 29115404 - 29115352
Alignment:
| Q |
129 |
catgtttggaaaaacagttcaattaagcgtttatagcataaatatttatcata |
181 |
Q |
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| T |
29115404 |
catgtttggataaacactttaattacgcgcttatagcataaacatttatcata |
29115352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Original strand, 27320198 - 27320250
Alignment:
| Q |
132 |
gtttggaaaaacagttcaattaagcgtttatagcataaatatttatcatataa |
184 |
Q |
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||||||||||||| || ||||||||| |||||||||||| | |||||| |||| |
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| T |
27320198 |
gtttggaaaaacaatttaattaagcgcttatagcataaacacttatcacataa |
27320250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 30257790 - 30257822
Alignment:
| Q |
232 |
aaaatgtttacgtcagtagataaactcaaataa |
264 |
Q |
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|||||||||| |||||||||||||||||||||| |
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| T |
30257790 |
aaaatgtttatgtcagtagataaactcaaataa |
30257822 |
T |
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