View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1240_high_48 (Length: 263)
Name: NF1240_high_48
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_48 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 40662655 - 40662402
Alignment:
| Q |
1 |
tccctccaggaaaatcgatgaactgaaacagtgagaggcagaattaaataatgttggggaatgaataatgcaacannnnnnnnnagataaatataatgca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40662655 |
tccctccaggaaaatcgatgaactgaaacagtgagaggcagaattaaataatgttggggaatgaataatgcaacatttttttttagataaatataatgca |
40662556 |
T |
|
| Q |
101 |
acatttataggaataatttggaaatcaattttttagcttattgataaaagccaccctgcattattatagggatttcaaagccaaaataattttagaacct |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662555 |
acatttataggaataatttggaaatcaattttttagcttattgataaaagccaccctgctttattatagggatttcaaagccaaaataattttagaacct |
40662456 |
T |
|
| Q |
201 |
aattctgttgatctcatacacatattttggcaatgcctttgttccaagtattat |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40662455 |
aattctgttgatctcatacacatattttggcaatgcctttgttccaagtattat |
40662402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University