View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_high_5 (Length: 605)

Name: NF1240_high_5
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_high_5
NF1240_high_5
[»] chr3 (11 HSPs)
chr3 (60-506)||(24227283-24227729)
chr3 (181-399)||(28675261-28675479)
chr3 (188-394)||(30167682-30167888)
chr3 (255-386)||(9378761-9378892)
chr3 (188-394)||(49732270-49732476)
chr3 (188-287)||(32004577-32004676)
chr3 (188-394)||(2813837-2814043)
chr3 (172-394)||(6176815-6177037)
chr3 (331-388)||(15484126-15484183)
chr3 (246-394)||(13448133-13448281)
chr3 (331-383)||(36708621-36708673)
[»] chr5 (6 HSPs)
chr5 (129-455)||(587054-587380)
chr5 (198-394)||(10487243-10487439)
chr5 (205-278)||(6264651-6264724)
chr5 (205-394)||(32917931-32918120)
chr5 (328-383)||(29094854-29094909)
chr5 (246-283)||(6020393-6020430)
[»] chr6 (6 HSPs)
chr6 (246-399)||(19256700-19256853)
chr6 (188-394)||(33629695-33629900)
chr6 (188-394)||(15673422-15673628)
chr6 (172-394)||(23347803-23348025)
chr6 (246-394)||(1682701-1682849)
chr6 (331-371)||(31297504-31297544)
[»] chr2 (6 HSPs)
chr2 (188-394)||(45421115-45421321)
chr2 (247-379)||(26180277-26180409)
chr2 (246-394)||(31085974-31086122)
chr2 (246-386)||(31774339-31774479)
chr2 (256-394)||(13549789-13549927)
chr2 (331-371)||(8066586-8066626)
[»] chr1 (7 HSPs)
chr1 (188-394)||(4644610-4644816)
chr1 (246-394)||(36928822-36928970)
chr1 (188-394)||(14365962-14366167)
chr1 (188-394)||(36305381-36305587)
chr1 (274-371)||(41061504-41061601)
chr1 (172-287)||(25639907-25640022)
chr1 (274-371)||(26720382-26720479)
[»] chr7 (9 HSPs)
chr7 (246-385)||(43104966-43105105)
chr7 (188-394)||(46623301-46623507)
chr7 (246-399)||(12379057-12379210)
chr7 (193-394)||(15654042-15654243)
chr7 (246-308)||(13775858-13775920)
chr7 (188-287)||(21277495-21277594)
chr7 (328-394)||(28327093-28327159)
chr7 (246-394)||(3104558-3104706)
chr7 (198-275)||(9546344-9546421)
[»] scaffold0418 (1 HSPs)
scaffold0418 (188-394)||(7272-7478)
[»] chr4 (9 HSPs)
chr4 (188-394)||(7663575-7663781)
chr4 (188-394)||(47540522-47540728)
chr4 (205-386)||(8655418-8655599)
chr4 (188-394)||(3130316-3130522)
chr4 (172-394)||(8487318-8487540)
chr4 (246-290)||(25875131-25875175)
chr4 (268-394)||(23279284-23279410)
chr4 (198-292)||(5817620-5817714)
chr4 (332-390)||(53809582-53809640)
[»] scaffold0029 (1 HSPs)
scaffold0029 (198-392)||(134975-135169)
[»] scaffold0002 (2 HSPs)
scaffold0002 (198-392)||(312802-312996)
scaffold0002 (198-392)||(328256-328450)
[»] chr8 (5 HSPs)
chr8 (274-371)||(26031175-26031272)
chr8 (246-394)||(7452007-7452155)
chr8 (188-392)||(19385049-19385253)
chr8 (246-308)||(28542658-28542720)
chr8 (327-396)||(9424994-9425063)
[»] scaffold0197 (1 HSPs)
scaffold0197 (246-287)||(12314-12355)
[»] scaffold0179 (1 HSPs)
scaffold0179 (274-371)||(7211-7308)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 60 - 506
Target Start/End: Original strand, 24227283 - 24227729
Alignment:
Q  60 aagtcaaaatgagattttataac-acaatagagcaattccgaaagtataagatgtgtctttgagactattaaaaggaacaaagagtatccaattcacaaa 158  Q
    ||||||||||||||||||||||| |||||| ||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  24227283 aagtcaaaatgagattttataactacaataaagcaatttcgaaagtataagatgcgcctttgagactattaaaaggaacaaagagtatccaattcacaaa 24227382  T
Q  159 catacaacatcagcattagtcgatgcccgaacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaa 258  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||    
T  24227383 catacaacatcagcattagtcgatgcccaaacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtaatttttttagctttcaaccaa 24227482  T
Q  259 cctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcac 358  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24227483 cctaacgacaacatcttaactttgtctaataagctgggaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcac 24227582  T
Q  359 acaaaagtcaaatgagttgcatgaaagagcgtctagttttatttgccactgtcaaaacagtaaactacaataaataatcagaagtgttattagtgtcgac 458  Q
    ||| ||  ||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |||||||||||||||| ||||||||||||| ||    
T  24227583 acagaa-ccaaatgagttgcatgaaagggcgtctagttttatttgcccttgtcaaaacagtaaactgcaataaataatcagaaatgttattagtgtcaac 24227681  T
Q  459 gatatataaatgatttatatatcttatttgtccttaaatttaatttaa 506  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||    
T  24227682 gatatataaatgatttatatatcttatttgtccttagatttaatttaa 24227729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 181 - 399
Target Start/End: Complemental strand, 28675479 - 28675261
Alignment:
Q  181 atgcccgaacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactt 280  Q
    |||||| |||| || ||||| | ||||||||| | ||| ||||  |||||||||||||       | |||||||||| ||||| |||||||||||||| |    
T  28675479 atgcccaaacaaactaaaggactcgaccaccactactgcgtaccgaaaacaaaagtagcttttttaactttcaaccagcctaaagacaacatcttaacct 28675380  T
Q  281 tgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcat 380  Q
    ||||||| || |   ||||||||||||||| |||  |||| ||||||||||| |||| ||| || ||||| ||  |||||| ||||||||||||||||||    
T  28675379 tgtctaacaatcgaggaatgggagtaacaacattattaaataggcgattatttcgttaattccacacaacacagacacacagaagtcaaatgagttgcat 28675280  T
Q  381 gaaagagcgtctagtttta 399  Q
     ||||| ||||||| ||||    
T  28675279 aaaagaacgtctagcttta 28675261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 394
Target Start/End: Complemental strand, 30167888 - 30167682
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| ||| | |||| | ||||||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  30167888 aacaaacaagagggcatgaccaccactgccgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaactttgtctaa 30167789  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | ||||| |||| |  | |||  |||| || |||||||| |||||||| || |||||||| ||||| | ||| || || |||||||| |||||     
T  30167788 caaacggggaatgagagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaa 30167689  T
Q  388 cgtctag 394  Q
    |||||||    
T  30167688 cgtctag 30167682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 255 - 386
Target Start/End: Original strand, 9378761 - 9378892
Alignment:
Q  255 ccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaa 354  Q
    ||||||||| |||||||||||||| ||||||||||| | | | ||||||||||||| |||  |||| || ||||  || | |||||| || ||||||||     
T  9378761 ccaacctaaagacaacatcttaaccttgtctaataaacgggggatgggagtaacaacattattaaacagacgatagtttcattcattccaaacaacccag 9378860  T
Q  355 gcacacaaaagtcaaatgagttgcatgaaaga 386  Q
    ||||||| |||||| ||||||||||| |||||    
T  9378861 gcacacagaagtcatatgagttgcataaaaga 9378892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 394
Target Start/End: Complemental strand, 49732476 - 49732270
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| |||||||||| ||| ||||||||||       ||||||||||||| |||| ||||||||||| || ||||||||    
T  49732476 aacacacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatcttgaccttgtctaa 49732377  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | ||||| |||| |  | |||  |||| || |||||||| || || || || |||||||  ||||| | ||| ||||| |||||||| |||||     
T  49732376 caaacggggaatgagagttattacattattaaacagacgattatttcgctcgttccacacaacccgggcacagagaagccaaataagttgcataaaagaa 49732277  T
Q  388 cgtctag 394  Q
    |||||||    
T  49732276 cgtctag 49732270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 188 - 287
Target Start/End: Original strand, 32004577 - 32004676
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| |||||||||| ||| ||||||||||       ||||||||||||| |||| ||||||||||| || ||||||||    
T  32004577 aacatacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagttcttttagctttcaaccaagctaaggacaacatcttgaccttgtctaa 32004676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 394
Target Start/End: Complemental strand, 2814043 - 2813837
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| ||||||||||||||||| | ||||||||| ||||       |||||||||||||||||  ||||||| |||||  || ||||     
T  2814043 aacaaacaagagggcatgaccaccattgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaacttaatcttatctag 2813944  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
    ||| |   | ||||| ||||||| ||   |||| |  || |||||||||||||| || || ||||| ||||| | |||||| || |||||||| || ||     
T  2813943 taaacaagggatgggggtaacaacatgattaaacatacggttattacgttcattccagactacccaggcacatagaagtcatattagttgcataaacgaa 2813844  T
Q  388 cgtctag 394  Q
    |||||||    
T  2813843 cgtctag 2813837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 172 - 394
Target Start/End: Complemental strand, 6177037 - 6176815
Alignment:
Q  172 cattagtcgatgcccgaacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaaca 271  Q
    |||||||| || ||| |||| |||| |||||  |||||||| |||||||| | ||||||||| ||||       |||||||||||||||||  |||||||    
T  6177037 cattagtcaatacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaaca 6176938  T
Q  272 tcttaactttgtctaataagc-tgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaa 370  Q
     |||||  || |||| ||| |  ||| ||| | ||||||| ||   |||| |  || |||||||||||||| || |||||||| ||||| ||||| || |    
T  6176937 gcttaatcttatctagtaaacaagag-atgagggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacataaaagccata 6176839  T
Q  371 tgagttgcatgaaagagcgtctag 394  Q
    | |||||||| ||||| |||||||    
T  6176838 ttagttgcataaaagaacgtctag 6176815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 331 - 388
Target Start/End: Complemental strand, 15484183 - 15484126
Alignment:
Q  331 ttacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagc 388  Q
    ||||||||||| || |||||||||| ||||||||| ||||| || |||||||| ||||    
T  15484183 ttacgttcattccacacaacccaagaacacaaaagccaaataagctgcatgaacgagc 15484126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 13448133 - 13448281
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    ||||||||||||| |||| |||||||  || || ||| |||| |||| |  ||||||||| |  | |||  |||| || |||||||| |||||||| ||     
T  13448133 agctttcaaccaagctaaggacaacaatttgaccttgcctaacaagcgggaaatgggagttattacattattaaacagacgattatttcgttcattccac 13448232  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    ||||| || ||||| | ||| ||||| |||||||| ||||| |||||||    
T  13448233 acaactcaggcacagagaagccaaataagttgcataaaagaacgtctag 13448281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 383
Target Start/End: Original strand, 36708621 - 36708673
Alignment:
Q  331 ttacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaa 383  Q
    ||||||||||| || || ||||||| ||||||||| ||||| |||||||||||    
T  36708621 ttacgttcattccacactacccaagaacacaaaagccaaataagttgcatgaa 36708673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 158; Significance: 9e-84; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 129 - 455
Target Start/End: Original strand, 587054 - 587380
Alignment:
Q  129 aaaaggaacaaagagtatccaattcacaaacatacaacatcagcattagtcgatgcccgaacagacaaaagggcacgaccaccattgctgagtactaaaa 228  Q
    ||||||| ||||||| | |||| | ||||| || ||||| | ||||||| ||||| || |||| ||||||||||||||| ||||||| || |||| ||||    
T  587054 aaaaggatcaaagaggacccaagttacaaatattcaacacccgcattagccgatgtccaaacaaacaaaagggcacgactaccattgttgtgtaccaaaa 587153  T
Q  229 acaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgat 328  Q
    ||||||||||       || ||||||||||||||| |||||||||||||||||||||||||||    ||||||||||||||| |||||||||||||||||    
T  587154 acaaaagtagtttttttaggtttcaaccaacctaatgacaacatcttaactttgtctaataagagaggaatgggagtaacaacatttctaaagaggcgat 587253  T
Q  329 tattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctagttttatttgccactgtcaaaacagtaaactacaa 428  Q
    |||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||||| |||    
T  587254 tattacgttcgttccatacaactcaagcacacaaaagccaaatgagttgcatgaaagagcgtctagctttacttgcctctgtcaaaagagtaaactgcaa 587353  T
Q  429 taaataatcagaagtgttattagtgtc 455  Q
    ||||| || | || |||||||||||||    
T  587354 taaatgattataaatgttattagtgtc 587380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 198 - 394
Target Start/End: Complemental strand, 10487439 - 10487243
Alignment:
Q  198 agggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgaga 297  Q
    |||||| |||||||| || ||||||| ||| ||||||||||       ||||||||||||| |||| ||||||||||| || || ||||| || | ||||    
T  10487439 agggcaagaccaccactgttgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatcttgaccttatctaacaaacggaga 10487340  T
Q  298 atgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    |||| ||| |  | |||  |||| || |||||||| || ||||| || |||||||| ||||| | ||| ||||| |||||||| ||||| |||||||    
T  10487339 atggaagttattacattattaaacagacgattatttcgctcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaacgtctag 10487243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 278
Target Start/End: Complemental strand, 6264724 - 6264651
Alignment:
Q  205 gaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaac 278  Q
    |||||||| |||||||| | ||||||||||||||       |||||||||||||||||| ||||||| ||||||    
T  6264724 gaccaccactgctgagttccaaaaacaaaagtagcttttttagctttcaaccaacctaaagacaacaacttaac 6264651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 394
Target Start/End: Original strand, 32917931 - 32918120
Alignment:
Q  205 gaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggag 304  Q
    |||||||| |||||||| | ||||||||| ||||       | |||| | ||||||||| |||||||||||||  || |||||||| |   | ||||| |    
T  32917931 gaccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagccaacctaaagacaacatcttaatcttatctaataaacaagggatggggg 32918030  T
Q  305 taacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    |||||| ||   |||| || || ||||| |||||||| || |||||||| ||||| | ||| ||||| |||||||| ||||| |||||||    
T  32918031 taacaacatgattaaacagacggttatttcgttcattccaaacaacccaggcacatagaagccaaattagttgcataaaagaccgtctag 32918120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 328 - 383
Target Start/End: Complemental strand, 29094909 - 29094854
Alignment:
Q  328 ttattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaa 383  Q
    |||||||||||||| |||| |||||||| ||||||||| ||||| ||| |||||||    
T  29094909 ttattacgttcattccatataacccaagaacacaaaagccaaataagtcgcatgaa 29094854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 283
Target Start/End: Original strand, 6020393 - 6020430
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgt 283  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  6020393 agctttcagccaacctaaagacaacatcttaactttgt 6020430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 246 - 399
Target Start/End: Original strand, 19256700 - 19256853
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||||||| ||||| |||||||| ||||| ||||||||||| | | |||| |  ||||||| |||  ||||||||| |||||| |||||||| ||     
T  19256700 agctttcaaccatcctaaagacaacatattaaccttgtctaataaacggggaatagacgtaacaacattattaaagaggcaattatttcgttcattccaa 19256799  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctagtttta 399  Q
    |||||| |  |||||| ||| |||||||||||||| ||||||||||||| ||||    
T  19256800 acaacctagacacacagaagccaaatgagttgcataaaagagcgtctagcttta 19256853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 33629695 - 33629900
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| || ||||||| ||| ||||||||||       ||||||||||||| |||| |||||||  || || ||||||||    
T  33629695 aacacacaagagggcatgaccaccactgttgagtaccaaacacaaaagtagtttttt-agctttcaaccaagctaaggacaacaatttgaccttgtctaa 33629793  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | |||||||||| |  |||||  |||| ||||||||||| |||| ||| || |||||||| ||||| | ||| ||||| |||||||| |||||     
T  33629794 caaacggggaatgggagttattatattattaaacaggcgattatttcgttaattccacacaacccaggcacagagaagccaaataagttgcataaaagaa 33629893  T
Q  388 cgtctag 394  Q
    |||||||    
T  33629894 cgtctag 33629900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 15673422 - 15673628
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||  |||||||| |||||||| | ||||||||| ||||       |||||||||||||||||  |||| || |||||  || |||||    
T  15673422 aacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacagcagcttaatcttatctaa 15673521  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
    ||| |   | ||||| ||||||| ||   |||| |  || |||||||||||||| || |||||||| ||||| | ||| ||||| |||||||| |||||     
T  15673522 taaacaagggatgggggtaacaaaatgattaaacaaacggttattacgttcattccaaacaacccaggcacatagaagccaaattagttgcataaaagaa 15673621  T
Q  388 cgtctag 394  Q
    |||||||    
T  15673622 cgtctag 15673628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 172 - 394
Target Start/End: Complemental strand, 23348025 - 23347803
Alignment:
Q  172 cattagtcgatgcccgaacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaaca 271  Q
    |||||||| || ||| |||| |||| |||||  |||||||| |||||||| | ||||||||| ||||       |||||||||||||||||  |||||||    
T  23348025 cattagtcaatacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaaca 23347926  T
Q  272 tcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
     |||||  || |||  ||| |   | ||||| ||||||| ||   |||| |  || |||||||||||||| || |||||||| ||||| ||||| || ||    
T  23347925 acttaatcttatctggtaaacaagggatgggggtaacaacatgattaaacatacggttattacgttcattccaaacaacccaggcacataaaagccatat 23347826  T
Q  372 gagttgcatgaaagagcgtctag 394  Q
     |||||||| ||||| |||||||    
T  23347825 tagttgcataaaagaacgtctag 23347803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 1682701 - 1682849
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    ||||||||||||| |||| |||||||  || || |||||||| || | | ||||| |||| |  | |||  |||| || |||||||| |||||||| ||     
T  1682701 agctttcaaccaagctaaggacaacaatttgaccttgtctaacaaacggggaatgagagttattacattattaaacagacgattatttcgttcattccac 1682800  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    |||||||| ||||| | ||| ||||| |||||||| ||||| |||||||    
T  1682801 acaacccaggcacagagaagccaaataagttgcataaaagaacgtctag 1682849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 31297544 - 31297504
Alignment:
Q  331 ttacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
    |||||||||||||||| |||||||| ||||||||| |||||    
T  31297544 ttacgttcatttcatataacccaagaacacaaaagccaaat 31297504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 45421115 - 45421321
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| ||||| |||| | ||||||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  45421115 aacaaacaagagggcatgaccaccactgctgggtaccataaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaactttgtctaa 45421214  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || |   ||||| |||| |  | |||  |||| || |||||||| |||||||| || |||||||| ||||| | ||| || || |||||||| |||||     
T  45421215 caaacgtggaatgtgagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaa 45421314  T
Q  388 cgtctag 394  Q
    |||||||    
T  45421315 cgtctag 45421321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 247 - 379
Target Start/End: Complemental strand, 26180409 - 26180277
Alignment:
Q  247 gctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcata 346  Q
    ||||||| | ||||||| |||| ||||||||| ||||||||||| | | | ||||||||||||| |||  || | ||||||||||| |||| ||||||||    
T  26180409 gctttcagctaacctaaagacatcatcttaaccttgtctaataaacgggggatgggagtaacaacattattataaaggcgattatttcgtttatttcata 26180310  T
Q  347 caacccaagcacacaaaagtcaaatgagttgca 379  Q
    |||| || ||||||| ||| || ||||||||||    
T  26180309 caactcaggcacacagaagccatatgagttgca 26180277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 246 - 394
Target Start/End: Complemental strand, 31086122 - 31085974
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||||| ||||||| |||||| ||||||  ||||||||||| |   | ||||||||||||| |||  |||| | ||| ||||| |||| ||| ||     
T  31086122 agctttcaactaacctaaagacaacgtcttaatcttgtctaataaacacgggatgggagtaacaacattattaaacatgcggttatttcgttaattccaa 31086023  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    |||||||| ||||||||||| || ||||||||||| ||||| |||||||    
T  31086022 acaacccaggcacacaaaaggcatatgagttgcataaaagaacgtctag 31085974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 386
Target Start/End: Original strand, 31774339 - 31774479
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||| | | ||||| |||||||||||||| || || |  || | | |||||||||||| || |||| |||| | |||| |||| |  ||||| ||     
T  31774339 agctttcagcaatcctaaagacaacatcttaaccttatcaagcaaacagggaatgggagtaataacatttttaaacaagcgactattgccctcattccac 31774438  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaaga 386  Q
    ||||| |||||||| | |||||| |||||||||||||||||    
T  31774439 acaactcaagcacaaagaagtcagatgagttgcatgaaaga 31774479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 256 - 394
Target Start/End: Original strand, 13549789 - 13549927
Alignment:
Q  256 caacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaag 355  Q
    |||||||| |||||||||||||  || |||||||| |   | ||||| ||||||| ||   |||| || || ||||| |||||||| || |||||||| |    
T  13549789 caacctaaagacaacatcttaatcttatctaataaacaagggatgggggtaacaacatgattaaacagacggttatttcgttcattccacacaacccagg 13549888  T
Q  356 cacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    |||| | ||| ||||| |||||||| ||||| |||||||    
T  13549889 cacaaagaagccaaataagttgcataaaagaacgtctag 13549927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 331 - 371
Target Start/End: Complemental strand, 8066626 - 8066586
Alignment:
Q  331 ttacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
    ||||||||||| |||| |||||||| |||||||||||||||    
T  8066626 ttacgttcattccatataacccaagaacacaaaagtcaaat 8066586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 1e-21; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 4644610 - 4644816
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| ||||||||||||||| |||||||||| ||| ||||||||||        ||||||||||||||||| ||||||||||| || ||||||||    
T  4644610 aacacacaagagggcacgaccaccactgctgagtaccaaacacaaaagtagctttttttgctttcaaccaacctaaggacaacatcttgaccttgtctaa 4644709  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || ||| |||||| ||| |  | |||  |||| ||  ||||||| |||||||| || |||||||| ||||| | ||| ||||  |||||||| |||||     
T  4644710 caaactgggaatggaagttattacattattaaacagatgattatttcgttcattccacacaacccaggcacagagaagccaaacaagttgcataaaagaa 4644809  T
Q  388 cgtctag 394  Q
    |||||||    
T  4644810 cgtctag 4644816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 36928822 - 36928970
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||||||||||||| ||||||||||| || |||||||| || |   | |||||||| | || |||  |||| || |||||||| |||||||| ||     
T  36928822 agctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgagggatgggagttataacattattaaacagacgattatttcgttcattccac 36928921  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    |||||||||||||| |  || ||||| |||||||| ||||| |||||||    
T  36928922 acaacccaagcacaaagtagccaaataagttgcataaaagaacgtctag 36928970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 394
Target Start/End: Complemental strand, 14366167 - 14365962
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| |||||||||| ||| |||||| |||       ||||||||||||| |||| ||||||||||| || ||||||||    
T  14366167 aacacacaagagggcatgaccaccactgctgagtaccaaacacaaaa-tagcttttttagctttcaaccaagctaaggacaacatcttgaccttgtctaa 14366069  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | ||||| |||| |  | |||  |||| || |||||||| || ||||| || |||||||||||||| | |||  |||| |||||||| |||||     
T  14366068 caaacggggaatgagagttattacattattaaacagacgattatttcgctcattccacacaacccaagcacagagaagctaaataagttgcataaaagaa 14365969  T
Q  388 cgtctag 394  Q
    |||||||    
T  14365968 cgtctag 14365962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 36305381 - 36305587
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| || || ||||| ||||||||  |||       |||||||||||||||||| ||||||||||| || ||||||||    
T  36305381 aacaaacaagagggcatgaccaccactgttgggtactgaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaa 36305480  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | |||||||||||| |  | |||  |||| || |||||||| |||||||| || ||||||||  |||| |  || || || |||||||| |||||     
T  36305481 caaacggagaatgggagttattacattattaaacagacgattatttcgttcattccacacaacccagacacaaagtagccatataagttgcataaaagaa 36305580  T
Q  388 cgtctag 394  Q
    |||||||    
T  36305581 cgtctag 36305587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 274 - 371
Target Start/End: Complemental strand, 41061601 - 41061504
Alignment:
Q  274 ttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
    |||||||| ||||| || |||||||| | |||||||| |||  | ||||| |  |||||||||||||| |||| ||||||| ||||||||||||||||    
T  41061601 ttaactttatctaacaacctgagaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagtcaaat 41061504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 287
Target Start/End: Complemental strand, 25640022 - 25639907
Alignment:
Q  172 cattagtcgatgcccgaacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaaca 271  Q
    |||||||| || ||| |||| |||| |||| | |||||||| ||||| |||| ||||||||||||||       |||||||||| ||| ||| |||||||    
T  25640022 cattagtcaatacccaaacaaacaagagggtatgaccaccactgctgggtaccaaaaacaaaagtagcttttctagctttcaactaacttaaggacaaca 25639923  T
Q  272 tcttaactttgtctaa 287  Q
    ||||||| || |||||    
T  25639922 tcttaaccttatctaa 25639907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 26720382 - 26720479
Alignment:
Q  274 ttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
    |||||||| ||||| || ||| |||| | |||||||| |||  | ||||| |  |||||||||||||| |||| ||||||| |||||||||| |||||    
T  26720382 ttaactttatctaacaacctgggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagccaaat 26720479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 246 - 385
Target Start/End: Original strand, 43104966 - 43105105
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||||||| ||||| || ||||||||||| ||||||||||| | | ||||||||||||| | |||  |||| |||||||| ||  ||||||| ||     
T  43104966 agctttcaaccatcctaaagaaaacatcttaaccttgtctaataaacggggaatgggagtaaccacattattaaacaggcgattgttttgttcattccaa 43105065  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaag 385  Q
    |||| |||||| |||||||| |||||||||| ||| ||||    
T  43105066 acaagccaagcgcacaaaagccaaatgagttacataaaag 43105105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 46623301 - 46623507
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| | ||| |||| ||||||||||||||       |||||||||||| ||||| |||||||||||||| ||||||||    
T  46623301 aacaaacaagagggcatgaccaccactactgggtaccaaaaacaaaagtagcttttttagctttcaaccatcctaaggacaacatcttaaccttgtctaa 46623400  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | ||||| |||| |  | |||  |||| || |||||||| ||||||||||| || ||||| ||||| | ||| || || |||||||| |||||     
T  46623401 caaacggggaatgagagttattacattattaaacagacgattatttcgttcatttcacacgacccatgcacaaagaagccatataagttgcataaaagaa 46623500  T
Q  388 cgtctag 394  Q
    |||||||    
T  46623501 cgtctag 46623507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 246 - 399
Target Start/End: Complemental strand, 12379210 - 12379057
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||| ||||||||| ||||||| |||||| ||||||||||| | | | ||||||||||| | |||  |||| ||||  ||||| |||||||| ||     
T  12379210 agctttcagccaacctaaagacaacaacttaacattgtctaataaacaggggatgggagtaactacattattaaacaggcatttatttcgttcattccac 12379111  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctagtttta 399  Q
    ||||| || ||||||| ||| || | ||||||||| ||||| ||||||| ||||    
T  12379110 acaacgcaggcacacagaagccatacgagttgcataaaagaacgtctagcttta 12379057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 193 - 394
Target Start/End: Complemental strand, 15654243 - 15654042
Alignment:
Q  193 acaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagc 292  Q
    |||| |||||| ||||| || ||||| |||| ||||||||||||||       |||||||||||| ||||| ||||||||||| || |||||||| || |    
T  15654243 acaagagggcatgaccatcactgctgggtaccaaaaacaaaagtagttttattagctttcaaccatcctaaagacaacatctttaccttgtctaacaaac 15654144  T
Q  293 tgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtct 392  Q
     | |||||||||| |  | |||  |||| || |||||||| |||||||| || ||||| || ||||| | ||| || || |||||||| ||||| |||||    
T  15654143 ggggaatgggagttattacattattaaacagacgattatttcgttcattccacacaactcatgcacaaagaagccatataagttgcataaaagaacgtct 15654044  T
Q  393 ag 394  Q
    ||    
T  15654043 ag 15654042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 308
Target Start/End: Complemental strand, 13775920 - 13775858
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaac 308  Q
    ||||||| |||| |||||  ||||||||||||| ||||||||||||| | |||||||||||||    
T  13775920 agctttcgaccaccctaaatacaacatcttaaccttgtctaataagcggggaatgggagtaac 13775858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 287
Target Start/End: Complemental strand, 21277594 - 21277495
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| ||||| |||| |||||||||  |||       |||||||||||||||||| ||||||||||| || ||||||||    
T  21277594 aacaaacaagagggcatgaccaccactgctgggtaccaaaaacaaagatagcttttttagctttcaaccaacctaaggacaacatctttaccttgtctaa 21277495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 28327093 - 28327159
Alignment:
Q  328 ttattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    |||||||||||||| || |||||||||||||| | ||| ||||| |||||||| ||||| |||||||    
T  28327093 ttattacgttcattccaaacaacccaagcacaaagaagccaaataagttgcataaaagaacgtctag 28327159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 3104558 - 3104706
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||| ||||||||| |||||||||||||| |||||||  || |   |||||||||| | || ||   |||| |||||||| || |||||||| ||     
T  3104558 agctttcagccaacctaaagacaacatcttaaccttgtctagcaaacatggaatgggagttataacatcattaaataggcgattgtttcgttcattccaa 3104657  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    ||||| || ||||||| ||| || |  |||||||| ||||| |||||||    
T  3104658 acaacacaggcacacataagacataatagttgcataaaagaacgtctag 3104706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 198 - 275
Target Start/End: Original strand, 9546344 - 9546421
Alignment:
Q  198 agggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatctt 275  Q
    |||||| |||||||| |||||||||| ||| ||||||||||       ||||||||||||| |||| |||||||||||    
T  9546344 agggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagctaaggacaacatctt 9546421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0418 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0418
Description:

Target: scaffold0418; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 7272 - 7478
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| || ||| |||||||| || || |||| ||||||||||||||       |||||||||||||||||| |||||||||||||| ||||||||    
T  7272 aacaaacaagagagcatgaccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaaccttgtctaa 7371  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | ||||| |||| |  | |||  |||| || |||||||| |||||||| || |||||||| ||||| | ||| || || |||||||| |||||     
T  7372 caaacggggaatgagagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaa 7471  T
Q  388 cgtctag 394  Q
    |||||||    
T  7472 cgtctag 7478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 188 - 394
Target Start/End: Complemental strand, 7663781 - 7663575
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| || ||| |||||||| || || |||| ||||||||||||||       |||||||||||||||||| |||||||||||||| ||||||||    
T  7663781 aacaaacaagagagcatgaccaccactgatgggtaccaaaaacaaaagtagcttttctagctttcaaccaacctaaggacaacatcttaaccttgtctaa 7663682  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | ||||| |||| |  | |||  |||| || |||||||| |||||||| || |||||||| ||||| | ||| || || |||||||| |||||     
T  7663681 caaacggggaatgagagttattacattattaaacagacgattattgcgttcattccacacaacccatgcacaaagaagccatataagttgcataaaagaa 7663582  T
Q  388 cgtctag 394  Q
    |||||||    
T  7663581 cgtctag 7663575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 188 - 394
Target Start/End: Original strand, 47540522 - 47540728
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| |||||||||| ||| ||||||||||       |||||||||||||  ||| ||||||||||| || ||||||||    
T  47540522 aacacacaagagggcatgaccaccactgctgagtaccaaacacaaaagtagcttttttagctttcaaccaagttaaggacaacatcttgaccttgtctaa 47540621  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | |  |||| |||| |  | |||  |||| || |||||||| |||||||| || |||||||| ||||| | ||| ||||| |||||||| |||||     
T  47540622 caaacgggaaatgagagttattacattattaaacagacgattatttcgttcattccacacaacccaggcacagagaagccaaataagttgcataaaagaa 47540721  T
Q  388 cgtctag 394  Q
    |||||||    
T  47540722 cgtctag 47540728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 205 - 386
Target Start/End: Complemental strand, 8655599 - 8655418
Alignment:
Q  205 gaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggag 304  Q
    |||||||| |||||||||| ||| ||||||||||       ||| ||||||||| |||| ||||||||||| || || ||||| || | | |||||||||    
T  8655599 gaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacggggaatgggag 8655500  T
Q  305 taacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaaga 386  Q
    | |  | |||  |||| ||||||||||| || ||||| || |||||||| ||||| | ||| ||||| |||||||| |||||    
T  8655499 ttattacattattaaacaggcgattatttcgctcattccacacaacccaggcacagagaagccaaataagttgcataaaaga 8655418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 188 - 394
Target Start/End: Complemental strand, 3130522 - 3130316
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| || ||||||  ||| ||||||||||       ||||||||||||| |||| |||||||  || || ||||||||    
T  3130522 aacacacaagagggcaagaccaccactgttgagtatcaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacaatttgaccttgtctaa 3130423  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     |||| | ||||| |||| |  | |||  |||| || ||||||||  ||||||| || |||||||| ||||| | ||| ||||| |||||||| |||||     
T  3130422 caagcggggaatgagagttattacattattaaacagacgattattttgttcattccacacaacccaggcacaaagaagccaaataagttgcataaaagaa 3130323  T
Q  388 cgtctag 394  Q
    |||||||    
T  3130322 cgtctag 3130316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 172 - 394
Target Start/End: Complemental strand, 8487540 - 8487318
Alignment:
Q  172 cattagtcgatgcccgaacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaaca 271  Q
    |||||||| || ||| |||| |||| |||||  |||||||| |||||||| | ||||||||| ||||       |||||||||||||||||  |||||||    
T  8487540 cattagtcaatacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaaca 8487441  T
Q  272 tcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
     |||||  || |||||||| |   | ||||| ||||||| ||   |||| |  || |||||||||||| | || |||||||| ||||| ||||| || ||    
T  8487440 gcttaatcttatctaataaacaagggatgggggtaacaacatgattaaacatacggttattacgttcagtccaaacaacccaggcacataaaagccatat 8487341  T
Q  372 gagttgcatgaaagagcgtctag 394  Q
     |||||||| ||||| |||||||    
T  8487340 tagttgcataaaagaacgtctag 8487318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 25875175 - 25875131
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataa 290  Q
    |||||||||||||||||| |||||||||||||| |||||||||||    
T  25875175 agctttcaaccaacctaaagacaacatcttaaccttgtctaataa 25875131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 268 - 394
Target Start/End: Original strand, 23279284 - 23279410
Alignment:
Q  268 aacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtc 367  Q
    ||||||||||| ||||||||||| | | | ||||||||||||| |||  |||| || |||||||| ||||| || || ||||||||  |||| | ||| |    
T  23279284 aacatcttaaccttgtctaataaacgggggatgggagtaacaacattattaaacagacgattatttcgttcgttccacacaacccacacacaaagaagcc 23279383  T
Q  368 aaatgagttgcatgaaagagcgtctag 394  Q
    | || |||||||| ||||||| |||||    
T  23279384 atataagttgcataaaagagcatctag 23279410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 198 - 292
Target Start/End: Complemental strand, 5817714 - 5817620
Alignment:
Q  198 agggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagc 292  Q
    |||||| |||||||| |||||||||| ||| ||||||||||       ||||||||||||| |||| ||||||||||| || || ||||| ||||    
T  5817714 agggcaagaccaccactgctgagtaccaaacacaaaagtagtttttttagctttcaaccaagctaaggacaacatcttgaccttatctaacaagc 5817620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 390
Target Start/End: Original strand, 53809582 - 53809640
Alignment:
Q  332 tacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgt 390  Q
    |||||||||| || |||||||||| |||||| || ||||| ||||||||||| ||||||    
T  53809582 tacgttcattccacacaacccaagtacacaatagccaaataagttgcatgaacgagcgt 53809640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 135169 - 134975
Alignment:
Q  198 agggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgaga 297  Q
    |||||| |||||||| |||||||||| ||| ||||||||||       ||| ||||||||| |||| ||||||||||| || || ||||| || | | ||    
T  135169 agggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacgggga 135070  T
Q  298 atgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtct 392  Q
    |||||||| |  | |||  |||| ||||||||||| || |||||  | |||||||||||||| | ||| ||||| |||||||| ||||| |||||    
T  135069 atgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 134975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 312996 - 312802
Alignment:
Q  198 agggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgaga 297  Q
    |||||| |||||||| |||||||||| ||| ||||||||||       ||| ||||||||| |||| ||||||||||| || || ||||| || | | ||    
T  312996 agggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacgggga 312897  T
Q  298 atgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtct 392  Q
    |||||||| |  | |||  |||| ||||||||||| || |||||  | |||||||||||||| | ||| ||||| |||||||| ||||| |||||    
T  312896 atgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 312802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 198 - 392
Target Start/End: Complemental strand, 328450 - 328256
Alignment:
Q  198 agggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaataagctgaga 297  Q
    |||||| |||||||| |||||||||| ||| ||||||||||       ||| ||||||||| |||| ||||||||||| || || ||||| || | | ||    
T  328450 agggcaagaccaccactgctgagtaccaaacacaaaagtagcttttttagccttcaaccaagctaaggacaacatcttgaccttatctaacaaacgggga 328351  T
Q  298 atgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtct 392  Q
    |||||||| |  | |||  |||| ||||||||||| || |||||  | |||||||||||||| | ||| ||||| |||||||| ||||| |||||    
T  328350 atgggagttattacattattaaacaggcgattatttcgctcattcgacacaacccaagcacagagaagccaaataagttgcataaaagaacgtct 328256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 26031175 - 26031272
Alignment:
Q  274 ttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
    |||||||| ||||| || ||| |||| | |||||||| |||  ||||||| |  |||||||||||||| |||| ||| ||| ||||||||||||||||    
T  26031175 ttaactttatctaacaacctgggaatagaagtaacaacattattaaagagtctgttattacgttcattccataaaactcaaacacacaaaagtcaaat 26031272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 394
Target Start/End: Original strand, 7452007 - 7452155
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcat 345  Q
    |||||||||||||||||| ||||||||||| || |||||||| || | | | |||||||| | || |||  |||| || ||||||||  ||||||| ||     
T  7452007 agctttcaaccaacctaaggacaacatctttaccttgtctaacaaacgggggatgggagttataacattattaaacagacgattattttgttcattccac 7452106  T
Q  346 acaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctag 394  Q
    ||||||||  |||| |  || || || |||||||| ||||| |||||||    
T  7452107 acaacccagtcacaaagtagccatataagttgcataaaagaacgtctag 7452155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 188 - 392
Target Start/End: Complemental strand, 19385253 - 19385049
Alignment:
Q  188 aacagacaaaagggcacgaccaccattgctgagtactaaaaacaaaagtagnnnnnnnagctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||| |||| |||||| |||||||| ||||||||||  || ||||||||||       |||||| ||||||  ||| ||||||||||| || ||||||||    
T  19385253 aacacacaagagggcatgaccaccactgctgagtaccgaacacaaaagtagcttttttagcttttaaccaagataaggacaacatcttgaccttgtctaa 19385154  T
Q  288 taagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagag 387  Q
     || | | ||||| |||| |  | |||  |||| || |||||||| |||||||| || ||||| || ||||| | |||  |||| |||||||| |||||     
T  19385153 gaaacggggaatgagagttattacattattaaacagacgattatttcgttcattccacacaacacaggcacagataagctaaataagttgcataaaagaa 19385054  T
Q  388 cgtct 392  Q
    |||||    
T  19385053 cgtct 19385049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 246 - 308
Target Start/End: Original strand, 28542658 - 28542720
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaataagctgagaatgggagtaac 308  Q
    |||||||||||| ||||| ||||||||| |||| ||||||||||| | | ||||| |||||||    
T  28542658 agctttcaaccatcctaaagacaacatcgtaaccttgtctaataaacggggaatgagagtaac 28542720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 396
Target Start/End: Original strand, 9424994 - 9425063
Alignment:
Q  327 attattacgttcatttcatacaacccaagcacacaaaagtcaaatgagttgcatgaaagagcgtctagtt 396  Q
    |||||||||||| || ||||| |||||| |||| | ||| |||| ||||||||| ||||||| |||||||    
T  9424994 attattacgttcgttccataccacccaaacacatacaagccaaacgagttgcataaaagagcttctagtt 9425063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 246 - 287
Target Start/End: Complemental strand, 12355 - 12314
Alignment:
Q  246 agctttcaaccaacctaacgacaacatcttaactttgtctaa 287  Q
    |||||||||||||||||| ||||||||||| || ||||||||    
T  12355 agctttcaaccaacctaaggacaacatctttaccttgtctaa 12314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0179 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0179
Description:

Target: scaffold0179; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 274 - 371
Target Start/End: Original strand, 7211 - 7308
Alignment:
Q  274 ttaactttgtctaataagctgagaatgggagtaacaatatttctaaagaggcgattattacgttcatttcatacaacccaagcacacaaaagtcaaat 371  Q
    |||||||| ||||| || ||| |||| | |||||||| |||  | ||||| |  |||||||||||||| |||| ||||||| |||||||||| |||||    
T  7211 ttaactttatctaacaacctgggaatagaagtaacaacattattgaagagtctgttattacgttcattccataaaacccaaacacacaaaagccaaat 7308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University