View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_high_52 (Length: 252)
Name: NF1240_high_52
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_52 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 16 - 252
Target Start/End: Original strand, 34385079 - 34385315
Alignment:
| Q |
16 |
atcaagatgtacaggaatttccttgttttcaagatgacagaaagttcctttgtgtttctctaatatcctatgtcattagaaatgaaaatggatatgaaat |
115 |
Q |
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| T |
34385079 |
atcaagatgtacaggaatttccttgttttcaagatgacagaaagttcctttgtgtttctctaatatcctatgtcattagaaatgaaaatggatatgaaat |
34385178 |
T |
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| Q |
116 |
acgtgcttaactctaataaaccttgtaaagagttagaagattctagaacaaggaaacatacttgatagaatctttgattagctcaaatggattgtcccct |
215 |
Q |
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| T |
34385179 |
atgtgcttaactctaataaaccttgtaaagagtaagaagattctagaacaaggaaacatacttgatagaatctttgattagctcaaatggattgtcccct |
34385278 |
T |
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| Q |
216 |
gaatttacaaatactgcctcaagtgattgagaagttt |
252 |
Q |
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| T |
34385279 |
gaatttacaaatactgcctcaagtgattgagaagttt |
34385315 |
T |
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