View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_high_9 (Length: 533)
Name: NF1240_high_9
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 30 - 522
Target Start/End: Original strand, 48076865 - 48077356
Alignment:
| Q |
30 |
aactcaactctgaaattggttctgatgtctttatttctgcaaatgcctttgcaatgaatatggatttcattggtaatccagaagcatacggtatatatat |
129 |
Q |
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| T |
48076865 |
aactcaactctgaaattggttctgatgtctttatttctgcaaatgcctttgcaatgaatatggatttcattggtaatccagaagcatacggtatatacat |
48076964 |
T |
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| Q |
130 |
gtccttcaacctcactttttattgtaccgtatttctaacatacacnnnnnnnnnnnnnnnnnnnnnnaagagactaacaactaaattcacataaactaaa |
229 |
Q |
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| T |
48076965 |
gtccttcaacctcactttttattgtaccgtatttctaatatacacatttttattttatttta-----aagagactaacaactaaattcacataaactaaa |
48077059 |
T |
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| Q |
230 |
tacaaatataacaaacatatcaaatcggtcttttacgatgtgaacttaaccatggatattcctgaattttaatgggtaacaaatatttcaaagactaaat |
329 |
Q |
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| T |
48077060 |
tacaaatataacaaacatatcaaatcggtcttttacgatgtgaacttcaccatggatattcctgaattttaatgggtaacaaatatttcaaagactaaat |
48077159 |
T |
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| Q |
330 |
ggagaatgaaactgggtgaaatttggaaaatattggtgtgagaccatatttaattttcccatcgacatacatatcatatcatgagtataaagtggaaata |
429 |
Q |
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| T |
48077160 |
ggagaatgaaactgggtgaaatttggaaaatattggtgt--gaccatatttaattttcccatcgacatacatatcatatcatgagtataaagtggaaata |
48077257 |
T |
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| Q |
430 |
aataatttactctgtcc------aatccaaatccaaatgaagccaccacttgcagatcacgttgaatggggaaaacagtttccagggaccacacttcat |
522 |
Q |
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| T |
48077258 |
aataatttactctgtccaatccaaatccaaatccaaatgaagccaccacttgcagatcacgttgaatggggaaaacagtttccaggaaccacacttcat |
48077356 |
T |
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