View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_12 (Length: 496)
Name: NF1240_low_12
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Original strand, 44599022 - 44599476
Alignment:
| Q |
13 |
aatatcacaagtaatatcaccagcttccccatcaagctcccaaatacaaatcctaggaaaaacgacactcttagaaccatcatccacactcacagaaacc |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
44599022 |
aatatcacaagtaatatcaccagcttccccatcaagctcccaaatacaaatcctaggaaaaaccacactcttagaaccatcatccacactcacagaaacc |
44599121 |
T |
|
| Q |
113 |
ctcttattctcatcattcccccaattccccgacgaaacactcccatcccgccacgtaaaaacacctttccctttaggcacaccattctcccaacaaccga |
212 |
Q |
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| T |
44599122 |
ctcttattctcatcattaccccaattcccggacgaaacactcccatcccgccacgtaaaaacacctttccctttaggaacaccattctcccaacaaccga |
44599221 |
T |
|
| Q |
213 |
cataacgattcccattcttccaaatcaaaacaccattaccacatatagcaccacatttccactcaccaacatactcattaccattcctccacatatacct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44599222 |
cataacgattcccattcttccaaatcaaaacaccattaccacatatagcaccacatttccactcaccaacatactcattaccattcctccacatatacct |
44599321 |
T |
|
| Q |
313 |
cccttccccatcttgcaaattgcacctccaccatccctcatacacatcaccattagcataacatttctcaccaaacccatgtttcctatcagaaacccac |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44599322 |
cccttccccatcttgcaaattgcacctccaccatccctcatacacatcaccattagcataacatttctcaccaaacccatgtttcctatcagaaacccac |
44599421 |
T |
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| Q |
413 |
tcacctttataagtatcaccttccacaccaacaaaagttccagaaccttccatag |
467 |
Q |
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| T |
44599422 |
tcacctttataagtatcaccttccacaccaacaaaagtaccagaaccttccatag |
44599476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 3e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 167 - 404
Target Start/End: Original strand, 39807499 - 39807736
Alignment:
| Q |
167 |
gtaaaaacacctttccctttaggcacaccattctcccaacaaccgacataacgattcccattcttccaaatcaaaacaccattaccacatatagcaccac |
266 |
Q |
| |
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||||||||||| ||||||||| | || ||||| |||||| | || |||||||||||||||| ||||| ||||| || ||||| || ||||||||| |
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| T |
39807499 |
gtaaaaacaccattccctttaagaaccccattttcccaaaacccttcataacgattcccattagcccaaaccaaaagccctttaccccagatagcaccat |
39807598 |
T |
|
| Q |
267 |
atttccactcaccaacatactcattaccattcctccacatatacctcccttccccatcttgcaaattgcacctccaccatccctcatacacatcaccatt |
366 |
Q |
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|||||| ||||||||||||||||| || || |||||| |||||| ||||| ||||||||||| || |||||||||||||| ||||||||||||||||| |
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| T |
39807599 |
ttttccattcaccaacatactcattcccgtttttccacacataccttccttcaccatcttgcaagttacacctccaccatccttcatacacatcaccatt |
39807698 |
T |
|
| Q |
367 |
agcataacatttctcaccaaacccatgtttcctatcag |
404 |
Q |
| |
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| T |
39807699 |
actataacgtttctcaccgaacccattttttctatcag |
39807736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 39807364 - 39807420
Alignment:
| Q |
17 |
tcacaagtaatatcaccagcttccccatcaagctcccaaatacaaatcctaggaaaa |
73 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
39807364 |
tcacaagtaatatcaccagcttcaccatcaagctcccaaatacaaatccttggaaaa |
39807420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 24523685 - 24523625
Alignment:
| Q |
13 |
aatatcacaagtaatatcaccagcttccccatcaagctcccaaatacaaatcctaggaaaa |
73 |
Q |
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||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| |
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| T |
24523685 |
aatatcacaagtaatatcaccagcttcaccttcagattcccaaatacaaatcctaggaaaa |
24523625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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