View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_13 (Length: 486)
Name: NF1240_low_13
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 9 - 457
Target Start/End: Original strand, 36092601 - 36093048
Alignment:
| Q |
9 |
caacaatattggcaccccaagaccatcacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttaggaaacttggcc |
108 |
Q |
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|||| |||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
36092601 |
caactatattgacatcccaagaccattacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttagaaaacttggcc |
36092700 |
T |
|
| Q |
109 |
aaaacctaagaaaacaaacaacaactacatcgataaaaacttaatatgacaaaattaaaccatattgaagaggaaaatagtgtagtgcgataaaacaaga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
36092701 |
aaaacctaagaaaacaaacaacaactacatcgataaaaacttaacatgacaaaattaaaccatattgaagatgaaaatagtgtagtgcaataaaacaaga |
36092800 |
T |
|
| Q |
209 |
gttaattgcaaatatcatgacaaacaaagcctaaactcaataaggcagtatctattaagaaaaaagtattctctaataacaattgaaggaaactccaatg |
308 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
36092801 |
gttaattacaaatatcatgacaaacaaagcctaaactcaataaggtagtatctattaag-aaaaagtattatctaataacaattgaaggaaactccaatg |
36092899 |
T |
|
| Q |
309 |
agcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcgagcgacttctctttcactttgta |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36092900 |
agcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagtttgagtcgagcgacttctctttcactttgta |
36092999 |
T |
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| Q |
409 |
tattcttcctttgtctccaattagtcaaaatcttcttcacttcttgatg |
457 |
Q |
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| T |
36093000 |
tattcttcctttgtctccaattagccaaaatcttcttcacttcttgatg |
36093048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 223 - 457
Target Start/End: Original strand, 36086821 - 36087055
Alignment:
| Q |
223 |
tcatgacaaacaaagcctaaactcaataaggcagtatctattaagaaaaaagtattctctaataacaattgaaggaaactccaatgagcttgtgaaaatc |
322 |
Q |
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||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |
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| T |
36086821 |
tcatgacaaacaaagcctaaactcaataaggcaatatcaattaagaaaaaagtattctctaataacaattgaaggaaactcccatgagcttgtgaatatc |
36086920 |
T |
|
| Q |
323 |
atacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcgagcgacttctctttcactttgtatattcttcctttgt |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
36086921 |
atacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagtttgagtcgagcgatttctctttcactttgtatattcttcctttgt |
36087020 |
T |
|
| Q |
423 |
ctccaattagtcaaaatcttcttcacttcttgatg |
457 |
Q |
| |
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|||||||||| |||||||||||||||||||||||| |
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| T |
36087021 |
ctccaattagccaaaatcttcttcacttcttgatg |
36087055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 36090106 - 36090333
Alignment:
| Q |
24 |
cccaagaccatcacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttaggaaacttggccaaaacctaagaaaac |
123 |
Q |
| |
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|||||| |||||| ||||||| || ||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||||||||| ||||||||||| |
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| T |
36090106 |
cccaaggccatcatctatcatatggagaaccctaataaatt-attgaaataaaa-agatgaatagaaggcttagaaaacttggccaaaccctaagaaaac |
36090203 |
T |
|
| Q |
124 |
aaacaacaactacatcgataaaaacttaatatgacaaaattaaaccatattgaagaggaaaatagtgtagtgcgataaaacaagagttaat---tgcaaa |
220 |
Q |
| |
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||||||||||| ||||||||||||||||||| |||||| | |||||||| |||| || | || |||||||||| | |||||| | ||||| | |||| |
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| T |
36090204 |
aaacaacaactgcatcgataaaaacttaataggacaaagtaaaaccataatgaatagaagaagagtgtagtgcaagaaaacagcaattaattagtacaaa |
36090303 |
T |
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| Q |
221 |
tatcatgacaaacaaagcctaaactcaata |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
36090304 |
tatcatgacaaacaaagcctaaactcaata |
36090333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 286 - 445
Target Start/End: Original strand, 36090426 - 36090585
Alignment:
| Q |
286 |
aacaattgaaggaaactccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcg |
385 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||| ||||| ||||||||| ||||| |||||||||| ||||||||||| |||||||||||| |||||||| |
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| T |
36090426 |
aacaaatgaaggaaactcccatgagcttgtgaatatcatgcatagaatccatgttttcactaaaacaagcagtgtttttaatttgctcaagtttgagtcg |
36090525 |
T |
|
| Q |
386 |
agcgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttctt |
445 |
Q |
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|||| ||||||||||| ||||| |||||||| || |||||| ||||| |||||||||||| |
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| T |
36090526 |
agcggcttctctttcaatttgtgtattcttcattcgtctccgattagccaaaatcttctt |
36090585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 347 - 450
Target Start/End: Original strand, 36082178 - 36082282
Alignment:
| Q |
347 |
aaaacgagcagtgtttt-gaatttgctcaagcttgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattagtcaaaatcttctt |
445 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
36082178 |
aaaacgagctgtgtttttgaatttgctcaagtttgagtcgagcgacttctctttcactttgtatattcttcctttgtctccaattaaccaaaatcttctt |
36082277 |
T |
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| Q |
446 |
cactt |
450 |
Q |
| |
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||||| |
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|
| T |
36082278 |
cactt |
36082282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 24 - 172
Target Start/End: Original strand, 36086512 - 36086654
Alignment:
| Q |
24 |
cccaagaccatcacctatcatttgaagaaccctaataaatacattgaaataaaaaagatgaatagaaagcttaggaaacttggccaaaacctaagaaaac |
123 |
Q |
| |
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|||||| |||||| ||||||| || |||||||||||||||| |||| ||||||| |||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
36086512 |
cccaaggccatcatctatcatatggagaaccctaataaatatattggaataaaa-agatgaatagaaggcttagaaaacttggccaaaacctaagaaaac |
36086610 |
T |
|
| Q |
124 |
aaacaacaactacatcgataaaaacttaatatgacaaaattaaaccata |
172 |
Q |
| |
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||||||||||| ||||||||||||||| |||||| | |||||||| |
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| T |
36086611 |
aaacaacaact-----gataaaaacttaataggacaaagtaaaaccata |
36086654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 302 - 401
Target Start/End: Original strand, 17434790 - 17434889
Alignment:
| Q |
302 |
tccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcgagcgacttctctttca |
401 |
Q |
| |
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||||||||| ||||||||||||| ||||| ||| ||||| ||||| |||||||| |||||||| || ||| || |||| ||||| |||||||||||| |
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| T |
17434790 |
tccaatgagtttgtgaaaatcatgcatagcatccatgttgtcactgaaacgagcggtgttttggataccctcgagtttgaaccgagccacttctctttca |
17434889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 302 - 399
Target Start/End: Original strand, 16857638 - 16857735
Alignment:
| Q |
302 |
tccaatgagcttgtgaaaatcatacatagaatctatgttctcactaaaacgagcagtgttttgaatttgctcaagcttgagtcgagcgacttctcttt |
399 |
Q |
| |
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||||||||| |||||||||||| ||||| |||||| ||||| |||||| |||||| ||||| || | ||| || |||||| |||| ||||||||| |
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| T |
16857638 |
tccaatgagtttgtgaaaatcaaacataacatctatactctcattaaaacaagcagtattttggatcttctcgagtttgagttgagccgcttctcttt |
16857735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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