View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_low_14 (Length: 481)

Name: NF1240_low_14
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_low_14
NF1240_low_14
[»] chr5 (28 HSPs)
chr5 (16-432)||(25941536-25941956)
chr5 (225-305)||(30371340-30371419)
chr5 (226-305)||(11795791-11795869)
chr5 (168-223)||(15549404-15549459)
chr5 (173-223)||(32398082-32398132)
chr5 (228-305)||(33867982-33868058)
chr5 (237-305)||(13710356-13710423)
chr5 (226-269)||(22650898-22650941)
chr5 (228-290)||(16602244-16602306)
chr5 (239-305)||(32911476-32911542)
chr5 (241-290)||(18652835-18652884)
chr5 (237-290)||(36169109-36169162)
chr5 (168-224)||(71265-71321)
chr5 (226-290)||(694261-694325)
chr5 (226-290)||(4297252-4297316)
chr5 (237-301)||(10437703-10437766)
chr5 (231-282)||(21126657-21126708)
chr5 (226-269)||(31963561-31963604)
chr5 (227-290)||(41005689-41005752)
chr5 (237-299)||(28518788-28518849)
chr5 (169-199)||(38084210-38084240)
chr5 (168-221)||(13356218-13356271)
chr5 (194-261)||(36346821-36346885)
chr5 (237-305)||(7505162-7505229)
chr5 (173-221)||(8717788-8717836)
chr5 (412-448)||(10362109-10362145)
chr5 (237-305)||(32397978-32398045)
chr5 (226-290)||(37067633-37067697)
[»] chr4 (38 HSPs)
chr4 (226-301)||(22493631-22493705)
chr4 (232-302)||(41856270-41856340)
chr4 (226-290)||(39235158-39235222)
chr4 (226-290)||(4406262-4406326)
chr4 (226-290)||(16170965-16171029)
chr4 (226-290)||(32599535-32599599)
chr4 (237-305)||(39533822-39533889)
chr4 (173-301)||(36786161-36786279)
chr4 (226-273)||(4708574-4708621)
chr4 (226-280)||(4484129-4484183)
chr4 (228-305)||(12912616-12912692)
chr4 (237-305)||(2582815-2582882)
chr4 (226-290)||(18423947-18424011)
chr4 (226-290)||(21142111-21142175)
chr4 (237-301)||(21224751-21224815)
chr4 (249-305)||(24156217-24156272)
chr4 (226-286)||(40881452-40881512)
chr4 (226-273)||(8826903-8826950)
chr4 (226-305)||(25022525-25022603)
chr4 (226-261)||(42911665-42911700)
chr4 (226-301)||(52914053-52914127)
chr4 (226-301)||(55936042-55936116)
chr4 (239-301)||(38381987-38382048)
chr4 (228-290)||(40814726-40814788)
chr4 (239-301)||(47181570-47181631)
chr4 (232-301)||(47308125-47308193)
chr4 (164-224)||(3094269-3094329)
chr4 (169-217)||(8311322-8311370)
chr4 (237-265)||(18626753-18626781)
chr4 (226-290)||(24448720-24448783)
chr4 (409-441)||(28702007-28702039)
chr4 (226-290)||(34616236-34616300)
chr4 (221-265)||(36072620-36072664)
chr4 (168-224)||(40575845-40575901)
chr4 (168-224)||(40575917-40575973)
chr4 (226-290)||(41654521-41654585)
chr4 (226-290)||(46803463-46803527)
chr4 (222-290)||(53176329-53176397)
[»] chr1 (42 HSPs)
chr1 (226-305)||(33765842-33765920)
chr1 (226-301)||(34953907-34953981)
chr1 (173-223)||(18607164-18607214)
chr1 (226-283)||(50503238-50503295)
chr1 (173-290)||(50550130-50550238)
chr1 (226-290)||(41007698-41007762)
chr1 (226-277)||(26674220-26674271)
chr1 (237-291)||(14885339-14885393)
chr1 (237-291)||(14885497-14885551)
chr1 (239-301)||(24981909-24981970)
chr1 (228-305)||(3549836-3549912)
chr1 (237-290)||(14967246-14967299)
chr1 (241-290)||(46495001-46495050)
chr1 (232-301)||(46829933-46830001)
chr1 (226-290)||(39362864-39362928)
chr1 (222-301)||(3013661-3013739)
chr1 (173-224)||(14891749-14891800)
chr1 (226-277)||(31998223-31998274)
chr1 (168-214)||(10832082-10832128)
chr1 (167-221)||(34953901-34953955)
chr1 (167-224)||(1597194-1597251)
chr1 (172-213)||(8455063-8455104)
chr1 (168-221)||(27864500-27864553)
chr1 (169-221)||(183957-184009)
chr1 (226-286)||(2492501-2492561)
chr1 (169-221)||(3549860-3549912)
chr1 (237-305)||(8396997-8397064)
chr1 (226-266)||(11324478-11324518)
chr1 (176-224)||(11324511-11324559)
chr1 (226-266)||(11482499-11482539)
chr1 (176-224)||(11482532-11482580)
chr1 (226-290)||(13877006-13877070)
chr1 (249-301)||(14967303-14967354)
chr1 (226-290)||(27068801-27068865)
chr1 (176-224)||(27068858-27068906)
chr1 (168-224)||(33400703-33400759)
chr1 (226-290)||(35544554-35544618)
chr1 (237-305)||(36486605-36486671)
chr1 (154-198)||(38595629-38595673)
chr1 (169-217)||(40610968-40611016)
chr1 (424-452)||(42720859-42720887)
chr1 (167-223)||(43728191-43728247)
[»] chr8 (37 HSPs)
chr8 (226-301)||(41387772-41387847)
chr8 (226-305)||(7484672-7484750)
chr8 (226-301)||(24017773-24017847)
chr8 (166-215)||(44098996-44099045)
chr8 (237-305)||(1897865-1897932)
chr8 (226-290)||(18603513-18603577)
chr8 (168-305)||(25267981-25268108)
chr8 (173-224)||(45045455-45045506)
chr8 (237-290)||(33385192-33385245)
chr8 (237-301)||(10934669-10934732)
chr8 (226-290)||(11295719-11295783)
chr8 (237-301)||(27502912-27502975)
chr8 (412-452)||(33709142-33709182)
chr8 (226-305)||(3225835-3225913)
chr8 (226-301)||(5888347-5888421)
chr8 (169-224)||(9015894-9015949)
chr8 (226-277)||(23574999-23575050)
chr8 (226-265)||(34580618-34580657)
chr8 (168-219)||(41753841-41753892)
chr8 (226-276)||(10117005-10117055)
chr8 (168-210)||(34057389-34057431)
chr8 (239-301)||(41753769-41753830)
chr8 (168-221)||(1897864-1897917)
chr8 (176-221)||(3687559-3687604)
chr8 (168-221)||(13080169-13080222)
chr8 (164-221)||(17871844-17871901)
chr8 (238-290)||(17923685-17923738)
chr8 (173-221)||(92769-92817)
chr8 (226-310)||(2805815-2805898)
chr8 (169-221)||(3225861-3225913)
chr8 (237-305)||(10815512-10815579)
chr8 (228-272)||(14599680-14599724)
chr8 (242-290)||(24842078-24842126)
chr8 (412-440)||(26399871-26399899)
chr8 (226-290)||(35874520-35874583)
chr8 (237-273)||(36916649-36916685)
chr8 (194-226)||(42795171-42795203)
[»] chr2 (45 HSPs)
chr2 (226-301)||(1961364-1961438)
chr2 (226-301)||(10602305-10602379)
chr2 (167-290)||(32630411-32630525)
chr2 (173-224)||(19951523-19951574)
chr2 (226-301)||(38465800-38465874)
chr2 (191-290)||(4563886-4563983)
chr2 (168-224)||(15859629-15859685)
chr2 (226-269)||(2050145-2050188)
chr2 (169-208)||(6648181-6648220)
chr2 (226-301)||(15119788-15119862)
chr2 (226-301)||(31024182-31024256)
chr2 (231-305)||(21488087-21488160)
chr2 (174-303)||(8383197-8383316)
chr2 (226-290)||(11093551-11093615)
chr2 (169-224)||(6166101-6166156)
chr2 (226-301)||(7079381-7079455)
chr2 (169-224)||(10996253-10996308)
chr2 (226-305)||(23377997-23378075)
chr2 (227-282)||(32143435-32143490)
chr2 (226-305)||(33555232-33555310)
chr2 (226-265)||(37195107-37195146)
chr2 (226-305)||(38181767-38181845)
chr2 (168-223)||(38581009-38581064)
chr2 (239-301)||(3098194-3098255)
chr2 (227-301)||(3121433-3121506)
chr2 (239-301)||(13333515-13333576)
chr2 (237-299)||(21183393-21183454)
chr2 (239-301)||(25270924-25270985)
chr2 (226-300)||(26003447-26003520)
chr2 (169-223)||(40590948-40591002)
chr2 (239-301)||(41056956-41057017)
chr2 (226-283)||(800748-800805)
chr2 (175-224)||(2144145-2144194)
chr2 (256-301)||(13304547-13304592)
chr2 (168-221)||(15916739-15916792)
chr2 (237-290)||(18479342-18479395)
chr2 (168-221)||(27331840-27331893)
chr2 (228-265)||(31102006-31102043)
chr2 (175-220)||(33129156-33129201)
chr2 (168-221)||(38181766-38181819)
chr2 (173-214)||(44868523-44868564)
chr2 (168-224)||(596105-596161)
chr2 (237-273)||(25899904-25899940)
chr2 (237-273)||(32460808-32460844)
chr2 (424-452)||(41073041-41073069)
[»] chr6 (26 HSPs)
chr6 (228-301)||(12104756-12104828)
chr6 (226-305)||(15517145-15517223)
chr6 (226-301)||(31996554-31996628)
chr6 (168-223)||(33689235-33689290)
chr6 (237-306)||(26527256-26527324)
chr6 (238-301)||(11745934-11745997)
chr6 (226-301)||(34379790-34379864)
chr6 (226-291)||(3199738-3199803)
chr6 (226-290)||(10258325-10258389)
chr6 (219-267)||(10788071-10788119)
chr6 (232-290)||(29122463-29122521)
chr6 (174-224)||(31996511-31996561)
chr6 (168-221)||(3203677-3203730)
chr6 (168-221)||(15517171-15517224)
chr6 (249-290)||(29072089-29072130)
chr6 (249-290)||(29104662-29104703)
chr6 (248-305)||(29419864-29419920)
chr6 (237-290)||(31158864-31158917)
chr6 (226-298)||(8145962-8146034)
chr6 (168-224)||(8449654-8449710)
chr6 (168-224)||(8458458-8458514)
chr6 (237-301)||(12218456-12218519)
chr6 (168-224)||(13281540-13281596)
chr6 (226-305)||(13506889-13506966)
chr6 (173-217)||(20704034-20704078)
chr6 (424-452)||(27095960-27095988)
[»] chr3 (41 HSPs)
chr3 (237-290)||(41253952-41254005)
chr3 (226-290)||(37807531-37807595)
chr3 (226-290)||(50744987-50745051)
chr3 (226-301)||(10872683-10872757)
chr3 (240-290)||(20625260-20625310)
chr3 (237-290)||(38893247-38893300)
chr3 (172-221)||(40169081-40169130)
chr3 (241-318)||(40639865-40639941)
chr3 (237-301)||(331810-331872)
chr3 (226-290)||(3020635-3020699)
chr3 (226-310)||(24722689-24722772)
chr3 (168-223)||(6124149-6124204)
chr3 (226-317)||(7823862-7823952)
chr3 (226-301)||(12744956-12745030)
chr3 (226-265)||(19810945-19810984)
chr3 (226-273)||(26121594-26121641)
chr3 (226-273)||(26244435-26244482)
chr3 (226-301)||(37897737-37897811)
chr3 (226-301)||(52215935-52216009)
chr3 (226-301)||(54595801-54595875)
chr3 (228-305)||(12109890-12109967)
chr3 (237-290)||(27224601-27224654)
chr3 (237-290)||(48191736-48191789)
chr3 (204-265)||(54690870-54690931)
chr3 (226-286)||(29222828-29222888)
chr3 (226-269)||(14756463-14756506)
chr3 (227-305)||(27668633-27668712)
chr3 (250-305)||(41254010-41254064)
chr3 (237-301)||(52866425-52866491)
chr3 (167-221)||(10872677-10872731)
chr3 (239-301)||(21217177-21217238)
chr3 (232-301)||(9170123-9170191)
chr3 (228-269)||(33613470-33613511)
chr3 (168-221)||(50603594-50603647)
chr3 (171-224)||(51253748-51253801)
chr3 (237-318)||(54783371-54783451)
chr3 (237-265)||(11472314-11472342)
chr3 (171-223)||(24596970-24597022)
chr3 (237-273)||(26243745-26243781)
chr3 (194-261)||(26770761-26770829)
chr3 (226-290)||(51060718-51060782)
[»] scaffold0113 (1 HSPs)
scaffold0113 (222-290)||(40474-40542)
[»] chr7 (30 HSPs)
chr7 (173-224)||(6803451-6803502)
chr7 (173-289)||(3882818-3882929)
chr7 (222-305)||(7295107-7295189)
chr7 (226-301)||(10095730-10095804)
chr7 (226-289)||(28289479-28289542)
chr7 (164-223)||(41106086-41106145)
chr7 (173-231)||(4089140-4089198)
chr7 (173-290)||(21586835-21586943)
chr7 (228-265)||(37101741-37101778)
chr7 (237-301)||(2943223-2943286)
chr7 (226-290)||(4089150-4089214)
chr7 (237-301)||(25245209-25245272)
chr7 (222-282)||(27242575-27242635)
chr7 (226-305)||(9555315-9555393)
chr7 (222-301)||(12088822-12088900)
chr7 (169-220)||(24934633-24934684)
chr7 (169-224)||(45985567-45985622)
chr7 (169-224)||(45989927-45989982)
chr7 (239-301)||(7701199-7701260)
chr7 (247-308)||(10095795-10095856)
chr7 (226-299)||(30138801-30138873)
chr7 (175-224)||(44819742-44819791)
chr7 (173-218)||(48440015-48440060)
chr7 (171-223)||(9930397-9930449)
chr7 (168-220)||(21886473-21886525)
chr7 (226-290)||(26477182-26477246)
chr7 (226-290)||(26553622-26553686)
chr7 (168-224)||(29205318-29205374)
chr7 (237-301)||(31115675-31115738)
chr7 (168-224)||(31813417-31813473)
[»] scaffold1137 (1 HSPs)
scaffold1137 (227-290)||(1083-1146)
[»] scaffold0036 (1 HSPs)
scaffold0036 (226-305)||(89605-89683)
[»] scaffold0026 (1 HSPs)
scaffold0026 (173-221)||(88935-88983)
[»] scaffold0009 (1 HSPs)
scaffold0009 (226-290)||(145989-146053)
[»] scaffold0065 (2 HSPs)
scaffold0065 (237-304)||(39175-39241)
scaffold0065 (161-221)||(36935-36995)
[»] scaffold0149 (1 HSPs)
scaffold0149 (237-301)||(24672-24735)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 16 - 432
Target Start/End: Complemental strand, 25941956 - 25941536
Alignment:
Q  16 gctccaaggtcaagaagtgaaatgatgtcaagatttaaaaaaggatagtttcacgtagaggagaaagctttaccttttt-aacctcaaatttatactttt 114  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||    
T  25941956 gctccaagctcaagaagtgaaatgatgtcaagatttaaaaaaggatagtttcacgtagaggagaaagttttacattttttaacctcaaatttatactttt 25941857  T
Q  115 tccacgaaaattaaaatctaggttgtttggtccatttactagtaaatcatctagtcattattataaacaaaaatcaatattttaagttcattcaattaat 214  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||  ||| ||||||||||||||||||||||||||||||||||||||||||    
T  25941856 tccacgaaaattaaaatctaggttgtttggtccatttactagtatatcatctgatcactattataaacaaaaatcaatattttaagttcattcaattaat 25941757  T
Q  215 aatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaatgaaatgt 314  Q
    ||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  25941756 aatatatatgttgtatatggtatttattttaaaccacatacatcatttaataaataaatttaatatgttgat-ttttgcttataataatgaatgaaatgt 25941658  T
Q  315 gtatttcataaaactacacccatgaagatgtgagtttaaaagaaaattctagaatga---agttcaaagcgaattctcaaaggattaaatactattgt-g 410  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |   | ||||||| |||||||||||||||||||||||||| | |    
T  25941657 gtatttcataaaactacacccatgaagatgcgagtttaaaagaaaattctagaataatagacttcaaagtgaattctcaaaggattaaatactattttgg 25941558  T
Q  411 ggagttaagatcctctccattt 432  Q
    ||||||||||| ||||||||||    
T  25941557 ggagttaagattctctccattt 25941536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 225 - 305
Target Start/End: Complemental strand, 30371419 - 30371340
Alignment:
Q  225 ttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||||| ||||||||||| ||||||||| ||||||||||| ||| ||| ||||| | ||||| |||||||||||||    
T  30371419 ttgtatatggtctttattataaatcacatacattatttaataaatgaatctaaaatgtt-aatttttacttataataatga 30371340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 11795791 - 11795869
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||||| ||||||||| |||||||| |||||||||| ||| |||| || || |||||||| |||||||||||||||    
T  11795791 tgtatatggtctttattatagaccacatatatcatttaatgaatgaataaaaaatattgatttt-tgcttataataatga 11795869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 15549459 - 15549404
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    |||| ||||||||||||||||||| ||||||  |||||||||||||||||||||||    
T  15549459 gtcactattataaacaaaaatcaacattttagattcattcaattaataatgtatat 15549404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 32398132 - 32398082
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    ||||||||||||||||| ||||||||| |||||||||||||| ||||||||    
T  32398132 tattataaacaaaaatctatattttaaattcattcaattaatgatgtatat 32398082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 33867982 - 33868058
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||| || |||||| || ||||||||||||||||| | ||||| ||||| ||||||| |||||||||||||||||||    
T  33867982 tatatagtctttattgtagaccacatacatcatttagtgaataattataaaatgttga-tttttgcttataataatga 33868058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 13710356 - 13710423
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||| ||| ||||||| ||||||| ||||||||||| ||||||| ||||| |||||||||||||    
T  13710356 tttattatagacctcatacattatttaatgaataaatataaaatgttga-tttttacttataataatga 13710423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 22650941 - 22650898
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaat 269  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  22650941 tgtatatggtctttattatagaccacatacatcatttaataaat 22650898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 16602244 - 16602306
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| ||||||||||||||||||||| |||| |||||| ||| ||| || |||||||||    
T  16602244 tatatggtctttattataaaccacatacataatttcataaatgaatctaaaatattgattttt 16602306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 305
Target Start/End: Complemental strand, 32911542 - 32911476
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||| || | |||||||||||||||||| ||  ||| | |||||||||||||||||||||||||    
T  32911542 tattatagactaaatacatcatttaataaatgaacctaaaaagttgattttttgcttataataatga 32911476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 18652835 - 18652884
Alignment:
Q  241 ttataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||||||||||||||||||| ||| ||| ||| ||||||||||||    
T  18652835 ttataaaccacatacatcatttaatgaatgaatctaaaatgttgattttt 18652884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 290
Target Start/End: Original strand, 36169109 - 36169162
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||||| ||||| |||||||||| ||||||||||| ||||||| ||||    
T  36169109 tttattataaactacatatatcatttaatgaataaatataaaatgttgactttt 36169162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 71265 - 71321
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| |||||||| |||||||| ||||||||  |||||||||||||| |||||||||    
T  71265 gtcactattataagcaaaaatctatattttagattcattcaattaatgatgtatatg 71321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 694261 - 694325
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||| ||||||||||| ||||| ||||||||  ||| ||||||||||||    
T  694261 tgtatatgatctttattatagaccacatacataatttattaaataaacctaaaatgttgattttt 694325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 4297252 - 4297316
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||| | || |||||||||||||| ||| ||||||| ||||||||||||    
T  4297252 tgtatatgttatttattatatatcaaatacatcatttaattaatgaatataaaatgttgattttt 4297316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 10437703 - 10437766
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||| || |||||||| ||||||||||| ||| ||| ||||||| |||||||||||||||    
T  10437703 tttattatagactacatacataatttaataaatgaatctaaaatgttga-tttttgcttataata 10437766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 282
Target Start/End: Complemental strand, 21126708 - 21126657
Alignment:
Q  231 atggtgtttattataaaccacatacatcatttaataaataaatataatatgt 282  Q
    ||||| ||||||||| ||||||||||||||| ||||||||||| ||| ||||    
T  21126708 atggtctttattatagaccacatacatcattaaataaataaatctaaaatgt 21126657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Complemental strand, 31963604 - 31963561
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaat 269  Q
    |||||||||| ||||||||| || ||||||||||||||||||||    
T  31963604 tgtatatggtctttattatagactacatacatcatttaataaat 31963561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 41005752 - 41005689
Alignment:
Q  227 gtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||  ||| |||| || |||||||||||||||||||| ||| ||| ||||||||||||    
T  41005752 gtatatggtcgttagtatagactacatacatcatttaataaatgaatctaaaatgttgattttt 41005689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 28518788 - 28518849
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataa 299  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||| || |||| |||||||||||||    
T  28518788 tttattatagaccacatacatcatttaatgaatcaatctaaaattttga-tttttgcttataa 28518849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 199
Target Start/End: Original strand, 38084210 - 38084240
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaa 199  Q
    |||||||||||||||||||||||||||||||    
T  38084210 tcattattataaacaaaaatcaatattttaa 38084240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 13356271 - 13356218
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||| |||||||| |  ||||||||||||||||| ||| ||||||    
T  13356271 gtcattattataagcaaaaatctactttttaagttcattcaataaatgatgtat 13356218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 194 - 261
Target Start/End: Original strand, 36346821 - 36346885
Alignment:
Q  194 ttttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatt 261  Q
    ||||| ||||||||||||||| ||||||||||   || ||||   |||||||||||||||||||||||    
T  36346821 ttttaggttcattcaattaatgatgtatatgt---atgtggtccatattataaaccacatacatcatt 36346885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 7505162 - 7505229
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||| | ||||||||||||||||| ||| |||  || ||||||| |||||| ||||||||||||    
T  7505162 tttattatagatcacatacatcatttaatgaatgaatccaaaatgttga-tttttgtttataataatga 7505229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 8717836 - 8717788
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||||||| ||||||||||  ||||| ||||||||||| ||||||||||    
T  8717836 tattataagcaaaaatcaaatttttaggttcattcaataaataatgtat 8717788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 448
Target Start/End: Complemental strand, 10362145 - 10362109
Alignment:
Q  412 gagttaagatcctctccatttctttcatttagagaga 448  Q
    |||||||||||||||||||||||  ||||||||||||    
T  10362145 gagttaagatcctctccatttctaccatttagagaga 10362109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 32398045 - 32397978
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||||||||||||||||| || ||||||| ||| ||| || || | |||||| ||||||||||||    
T  32398045 tttattataaaccacatacatctttcaataaatgaatctaaaatatt-aatttttgtttataataatga 32397978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 37067697 - 37067633
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| ||||| ||| ||||||||||||||||||| ||| ||| ||| || || ||||||    
T  37067697 tgtatatggtatttatcatacaccacatacatcatttaatgaatgaatctaaaatattaattttt 37067633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 38)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 22493631 - 22493705
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||| | ||||||||||||||||||||| ||||||| |||||| ||||||||||||||||    
T  22493631 tgtatatggtctttattatagatcacatacatcatttaataaatgaatataaaatgttg-ttttttgcttataata 22493705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 232 - 302
Target Start/End: Original strand, 41856270 - 41856340
Alignment:
Q  232 tggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataa 302  Q
    |||| |||||||||||||||||| |||||| ||||||| ||| ||| ||||||||||||||||||||||||    
T  41856270 tggtatttattataaaccacatatatcattaaataaatgaatctaaaatgttgattttttgcttataataa 41856340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 39235222 - 39235158
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  39235222 tgtatatgatctttattataaaccacatacatcatttaataaatgaatctaaaatgttgattttt 39235158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 4406326 - 4406262
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||| |||| ||||||||| ||||||||||||||||||| ||||||| ||| ||||||||||||    
T  4406326 tgtatgtggtctttattatagaccacatacatcatttaatgaataaatctaaaatgttgattttt 4406262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 16170965 - 16171029
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| ||||||||| || |||||||||||||||| ||||||| ||| ||||||||||||    
T  16170965 tgtatatggtctttattatagactacatacatcatttaattaataaatctaaaatgttgattttt 16171029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 32599535 - 32599599
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| ||||||||||||||||||||||||||||||||| ||| ||| || || ||||||    
T  32599535 tgtatatggtctttattataaaccacatacatcatttaataaatgaatctaaaatattaattttt 32599599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 39533822 - 39533889
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||| | ||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||||||    
T  39533822 tttattatagatcacatacatcatttaatgaataaatctaaaatgttga-tttttgcttataataatga 39533889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 301
Target Start/End: Original strand, 36786161 - 36786279
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataaataaa 272  Q
    ||||||||||||||||||| ||||||  ||||||||||||         ||| ||||||| || |||||||||||||||||||||||||| || ||| ||    
T  36786161 tattataaacaaaaatcaacattttagattcattcaatta---------atgatgtatatagtctttattataaaccacatacatcatttgatgaatgaa 36786251  T
Q  273 tataatatgttgattttttgcttataata 301  Q
    |  || || |||| |||||||||||||||    
T  36786252 tccaaaatattga-tttttgcttataata 36786279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 4708621 - 4708574
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaat 273  Q
    |||||||| | ||||||||| |||||||||||||||||||||||||||    
T  4708621 tgtatatgatctttattatagaccacatacatcatttaataaataaat 4708574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 226 - 280
Target Start/End: Original strand, 4484129 - 4484183
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatat 280  Q
    |||||||||| ||||||||| ||||||||||||||||||| || |||| ||||||    
T  4484129 tgtatatggtctttattatagaccacatacatcatttaatgaacaaatctaatat 4484183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 305
Target Start/End: Complemental strand, 12912692 - 12912616
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||| | ||||||||| |||| |||||||||||||| ||||||| ||| ||||| | ||||| |||||||||||||    
T  12912692 tatatgatttttattatataccatatacatcatttaatgaataaatctaaaatgtt-aatttttacttataataatga 12912616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 2582882 - 2582815
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||| || |||||||||||||||| ||| ||| ||| || |||| |||||||||||||||||||    
T  2582882 tttattatagactacatacatcatttaatgaatcaatctaaaatattga-tttttgcttataataatga 2582815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 18423947 - 18424011
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||||| || |||||||||||||| ||||||| |||||| || ||||||    
T  18423947 tgtatatgatctttattataaatcatatacatcatttaatgaataaatctaatatatttattttt 18424011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 21142175 - 21142111
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| |||||||||||| | ||||||||||||||  || ||| ||| ||||||||||||    
T  21142175 tgtatatggtctttattataaactaaatacatcatttaatgcatgaatctaaaatgttgattttt 21142111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 21224751 - 21224815
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||||||| ||||||||||||| ||| ||| ||| |||| | ||||||| ||||||||    
T  21224751 tttattataaaccacgtacatcatttaatgaatgaatctaaaatgtagtttttttgtttataata 21224815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 305
Target Start/End: Original strand, 24156217 - 24156272
Alignment:
Q  249 cacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||||||||||||||||||| ||| ||||| |  ||||||||||||||||||    
T  24156217 cacatacatcatttaataaataaatctaaaatgtt-aaattttgcttataataatga 24156272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 40881512 - 40881452
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgat 286  Q
    |||||||| | |||||||||   ||||||||||||||||||||||||| ||| ||||||||    
T  40881512 tgtatatgatctttattatatgtcacatacatcatttaataaataaatttaaaatgttgat 40881452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 273
Target Start/End: Complemental strand, 8826950 - 8826903
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaat 273  Q
    |||||||||| ||||||||| | ||||||||||||||||| |||||||    
T  8826950 tgtatatggtctttattatagatcacatacatcatttaatgaataaat 8826903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 25022603 - 25022525
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||| |||||||||||| | ||||||||||||||||| ||| ||| ||| ||||| | ||| || ||||||||||||    
T  25022603 tgtatattgtgtttattatagatcacatacatcatttaatgaatgaatgtaaaatgtt-aatttgtgtttataataatga 25022525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 261
Target Start/End: Complemental strand, 42911700 - 42911665
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatt 261  Q
    |||||||||||| |||||||||||||||||||||||    
T  42911700 tgtatatggtgtatattataaaccacatacatcatt 42911665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 52914053 - 52914127
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||| || ||||||||| ||||||||||||||||||| ||| ||| ||| || || | |||||||||||||||    
T  52914053 tgtatatagtctttattatagaccacatacatcatttaatgaatgaatctaaaatatt-aatttttgcttataata 52914127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 55936042 - 55936116
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||| || ||||||||  ||||||||||||||||||| ||| ||| ||| || |||| |||||||||||||||    
T  55936042 tgtatatcgtctttattatcgaccacatacatcatttaatgaatgaatctaaaatattga-tttttgcttataata 55936116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 38382048 - 38381987
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||||||||||||||||||| ||| ||| ||| ||| | | |||||||||||||||    
T  38382048 tattataaaccacatacatcatttaatcaatgaatctaaaatg-taaatttttgcttataata 38381987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 228 - 290
Target Start/End: Original strand, 40814726 - 40814788
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||| | |||||||||||||||||| |||||||||| ||| ||| ||| ||||| ||||||    
T  40814726 tatatgatctttattataaaccacatatatcatttaatgaatgaatctaaaatgttaattttt 40814788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 47181631 - 47181570
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| |||| || |||||||||||||||    
T  47181631 tattataaaccgcatacatcatttaatgaatgaatttaaaatgtaga-tttttgcttataata 47181570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 47308193 - 47308125
Alignment:
Q  232 tggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||| |||||||||||||| |||||||||| ||| ||| |||  || |||||||| ||||||||||||||    
T  47308193 tggtctttattataaaccatatacatcattaaatgaatgaatccaaaatgttgat-ttttgcttataata 47308125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 3094269 - 3094329
Alignment:
Q  164 tctagtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||| ||||||||||||||||  || |||||  |||||||||| ||| |||||||||    
T  3094269 tctagtcactattataaacaaaaatttattttttatattcattcaataaatgatgtatatg 3094329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Complemental strand, 8311370 - 8311322
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataat 217  Q
    |||||||||||| ||||||||||  |||||| |||||||||| ||||||    
T  8311370 tcattattataagcaaaaatcaactttttaaattcattcaataaataat 8311322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 265
Target Start/End: Complemental strand, 18626781 - 18626753
Alignment:
Q  237 tttattataaaccacatacatcatttaat 265  Q
    |||||||||||||||||||||||||||||    
T  18626781 tttattataaaccacatacatcatttaat 18626753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 24448720 - 24448783
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||| || ||||||||||| ||||||||||||||||| ||| ||| ||| | ||||||||||    
T  24448720 tgtatatagtctttattataaatcacatacatcatttaattaatgaatgtaa-aagttgattttt 24448783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 409 - 441
Target Start/End: Complemental strand, 28702039 - 28702007
Alignment:
Q  409 tgggagttaagatcctctccatttctttcattt 441  Q
    |||||| ||||||||||||||||||||||||||    
T  28702039 tgggagctaagatcctctccatttctttcattt 28702007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 34616300 - 34616236
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||| || | ||||||||||| ||||||||||||||| ||| ||| ||| |||| |||||||    
T  34616300 tgtatatagtctgtattataaaccgcatacatcatttaatgaatgaatctaaaatgtagattttt 34616236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 36072620 - 36072664
Alignment:
Q  221 tatgttgtatatggtgtttattataaaccacatacatcatttaat 265  Q
    |||| |||||||||| ||||||||| || ||||||||||||||||    
T  36072620 tatgatgtatatggtctttattatagactacatacatcatttaat 36072664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 40575845 - 40575901
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| |||||||||||||||| || ||||||| |||||| | | |||||||||||||    
T  40575845 gtcactattataaacaaaaatgaacattttaaattcatttattaaataatgtatatg 40575901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 40575973 - 40575917
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||||||| || ||| || ||||||  || |||||||||||||||||||||    
T  40575973 gtcattattataaataataattaacattttagatttattcaattaataatgtatatg 40575917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 41654585 - 41654521
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||| |||| |||||||| ||||| ||| ||| ||| ||||||||||||    
T  41654585 tgtatatgatatttattatagaccatatacatcaattaattaattaatctaaaatgttgattttt 41654521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 46803463 - 46803527
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||| || ||||||||||||||||||||| ||||||| ||  ||| |||  |||||||||||    
T  46803463 tgtatatagtctttattataaaccacatacataatttaatgaaagaatctaaactgttgattttt 46803527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 53176397 - 53176329
Alignment:
Q  222 atgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||| || | ||| |||||||  |||||||||||||||| ||| ||||||| ||||| ||||||    
T  53176397 atgttgtatttgatcttttttataaataacatacatcatttaatgaatgaatataaaatgttaattttt 53176329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 42)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 33765842 - 33765920
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||||| ||||||||| ||||||||||||||||||||||| ||| ||| ||||||| |||||||||||||| ||||    
T  33765842 tgtatatggtctttattatagaccacatacatcatttaataaatgaatctaaaatgttga-tttttgcttataattatga 33765920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 34953981 - 34953907
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||| ||| ||| || |||| |||||||||||||||    
T  34953981 tgtatatggtctttattatagaccacatacatcatttaatgaatgaatttaaaatattga-tttttgcttataata 34953907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 173 - 223
Target Start/End: Complemental strand, 18607214 - 18607164
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| |||||    
T  18607214 tattataaacaaaaatctatattttaaattcattcaattaataatatatat 18607164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 50503238 - 50503295
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgtt 283  Q
    |||||||| | ||||||||| ||||||||||||||||||||||| ||||||| |||||    
T  50503238 tgtatatgatctttattatagaccacatacatcatttaataaatgaatataaaatgtt 50503295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 290
Target Start/End: Original strand, 50550130 - 50550238
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataaataaa 272  Q
    ||||||||| ||||||||| ||| ||| ||||||||||||||||         |||||||| | ||||||||| | ||||||||||||||||| ||| ||    
T  50550130 tattataaataaaaatcaacattataaattcattcaattaataa---------tgtatatgatctttattatagatcacatacatcatttaatgaatgaa 50550220  T
Q  273 tataatatgttgattttt 290  Q
    | ||| ||||||||||||    
T  50550221 tctaaaatgttgattttt 50550238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 41007762 - 41007698
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||| |||| ||||||||| ||||||||||||||||||| ||||||| ||| || |||||||||    
T  41007762 tgtatgtggtctttattatagaccacatacatcatttaatgaataaatttaaaatattgattttt 41007698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 26674271 - 26674220
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataa 277  Q
    |||||||||| ||||||||| ||||||||||| ||||||| |||||||||||    
T  26674271 tgtatatggtctttattatagaccacatacataatttaatgaataaatataa 26674220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 14885393 - 14885339
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgatttttt 291  Q
    ||||||||| ||||||||||| ||||||| ||||||| ||| |||||||||||||    
T  14885393 tttattatagaccacatacataatttaatgaataaatttaaaatgttgatttttt 14885339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 291
Target Start/End: Complemental strand, 14885551 - 14885497
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgatttttt 291  Q
    ||||||||| ||||||||||| ||||||| ||||||| ||| |||||||||||||    
T  14885551 tttattatagaccacatacataatttaatgaataaatttaaaatgttgatttttt 14885497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 24981909 - 24981970
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  24981909 tattataaaccgcatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataata 24981970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 3549836 - 3549912
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||| ||| ||||||||| ||||||||||| ||||||| ||| ||| ||| ||||| | |||||||||||||||||||    
T  3549836 tatacggtctttattatagaccacatacattatttaatgaatgaatttaaaatgtt-aatttttgcttataataatga 3549912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 14967299 - 14967246
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||  |||||||||||||||||| ||||||| ||| ||||||||||||    
T  14967299 tttattataggccacatacatcatttaatgaataaatgtaaaatgttgattttt 14967246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 46495050 - 46495001
Alignment:
Q  241 ttataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||| ||| |||||||||||||||||||||||| ||| ||||||||||||    
T  46495050 ttattaactacatacatcatttaataaataaatctaaaatgttgattttt 46495001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 232 - 301
Target Start/End: Original strand, 46829933 - 46830001
Alignment:
Q  232 tggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||| ||||||||||||||| ||||||||||||| ||||||| ||| |||| | ||||||||| ||||||    
T  46829933 tggtctttattataaaccacgtacatcatttaatgaataaatctaaaatgtag-ttttttgctaataata 46830001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 39362864 - 39362928
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||| ||||||||| ||||||||||||| ||| ||| || |||||||||    
T  39362864 tgtatatgatctttattatagaccacatacttcatttaataaatgaatctaaaatattgattttt 39362928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 301
Target Start/End: Original strand, 3013661 - 3013739
Alignment:
Q  222 atgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||| |||| |||||||||||  | |||||||||||||| ||| ||| ||| ||||| | |||||||||||||||    
T  3013661 atgttgtatgtggtctttattataaataatatacatcatttaatgaatgaatgtaaaatgtt-aatttttgcttataata 3013739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 173 - 224
Target Start/End: Original strand, 14891749 - 14891800
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||| |||||||||||||||||| ||||||| | ||| |||||||||    
T  14891749 tattataaagaaaaatcaatattttaagatcattcattaaatgatgtatatg 14891800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 31998274 - 31998223
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataa 277  Q
    |||||||| | ||||||||| | ||||||||||||||||||||| |||||||    
T  31998274 tgtatatgatctttattatagatcacatacatcatttaataaatgaatataa 31998223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 10832128 - 10832082
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaat 214  Q
    |||| ||||||||||||||||| | |||||| |||||||||||||||    
T  10832128 gtcactattataaacaaaaatctacattttaggttcattcaattaat 10832082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 34953901 - 34953955
Alignment:
Q  167 agtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||| |||||||| |||||||||||||||||| |||||||| | ||| ||||||    
T  34953901 agtcactattataagcaaaaatcaatattttaaattcattcattaaatgatgtat 34953955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 224
Target Start/End: Original strand, 1597194 - 1597251
Alignment:
Q  167 agtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||||||||| |||||  | ||||||| || ||||||||||| |||||||||    
T  1597194 agtcattattataaacgaaaatatacattttaaatttattcaattaatgatgtatatg 1597251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 213
Target Start/End: Original strand, 8455063 - 8455104
Alignment:
Q  172 ttattataaacaaaaatcaatattttaagttcattcaattaa 213  Q
    |||||||||||||||||| | |||||| ||||||||||||||    
T  8455063 ttattataaacaaaaatctacattttaggttcattcaattaa 8455104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 27864553 - 27864500
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||| ||||||||| |||||||||| ||||| ||||||||||| ||| ||||||    
T  27864553 gtcactattataaataaaaatcaattttttaggttcattcaataaatgatgtat 27864500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 184009 - 183957
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||| |||||  |||||||||| |||||| ||| ||||||||||    
T  184009 tcattattataaataaaaaataatattttaaattcatttaataaataatgtat 183957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 2492561 - 2492501
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgat 286  Q
    |||||||| | ||||||||||||||||||||||||| | | ||| ||| ||| ||||||||    
T  2492561 tgtatatgatctttattataaaccacatacatcattcagtgaatgaatctaaaatgttgat 2492501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 3549912 - 3549860
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||||||||||| ||||||| || ||||||| |||||||| | ||||||||||    
T  3549912 tcattattataagcaaaaattaacattttaaattcattcattaaataatgtat 3549860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 8397064 - 8396997
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||| | |||||| |||||||||||||||||| ||| || |||| ||| || ||||||||||||    
T  8397064 tttattatagatcacatatatcatttaataaataaatttaaaatattga-tttctgtttataataatga 8396997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 11324518 - 11324478
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaata 266  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  11324518 tgtatatggtctttattatagactacatacatcatttaata 11324478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 11324559 - 11324511
Alignment:
Q  176 tataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||| |||||| || ||||||| |||||||||||||| |||||||||    
T  11324559 tataaataaaaattaacattttaaattcattcaattaatgatgtatatg 11324511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 266
Target Start/End: Complemental strand, 11482539 - 11482499
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaata 266  Q
    |||||||||| ||||||||| || |||||||||||||||||    
T  11482539 tgtatatggtctttattatagactacatacatcatttaata 11482499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 11482580 - 11482532
Alignment:
Q  176 tataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||| |||||| || ||||||| |||||||||||||| |||||||||    
T  11482580 tataaataaaaattaacattttaaattcattcaattaatgatgtatatg 11482532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 13877070 - 13877006
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||| | || |||||||||||||| ||||||| ||| ||||| ||||||    
T  13877070 tgtatatgatctttattatatatcatatacatcatttaatgaataaatttaaaatgttaattttt 13877006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 249 - 301
Target Start/End: Original strand, 14967303 - 14967354
Alignment:
Q  249 cacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  14967303 cacatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataata 14967354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 27068865 - 27068801
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| ||||| |||   |||| |||| ||||||||||||||| ||| ||||||||||||    
T  27068865 tgtatatggtatttatgataggtcacaaacattatttaataaataaatctaaaatgttgattttt 27068801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 27068906 - 27068858
Alignment:
Q  176 tataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||||||| | ||||||| | |||| |||||||||||||||||    
T  27068906 tataaacaaaaatctacattttaaatccattgaattaataatgtatatg 27068858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 33400759 - 33400703
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||||||||||||||| ||| |  |  |||||||||| |||||||||||||    
T  33400759 gtcattattataaacaaaaatctatactagagattcattcaataaataatgtatatg 33400703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 35544618 - 35544554
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||| |||| || |||||| ||||||||||||||||||  ||| ||| ||| ||||||||||||    
T  35544618 tgtatgtggtcttcattatagaccacatacatcatttaacgaatgaatttaaaatgttgattttt 35544554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 36486605 - 36486671
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||||||||| |||||||||||||| ||| ||||||| || || | ||||| |||||||||||||    
T  36486605 tttattataaaccatatacatcatttaat-aatgaatataaaatatt-aatttttacttataataatga 36486671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 38595629 - 38595673
Alignment:
Q  154 tagtaaatcatctagtcattattataaacaaaaatcaatatttta 198  Q
    ||||||||||||  |||||||||||||| |||||| |||||||||    
T  38595629 tagtaaatcatcatgtcattattataaataaaaattaatatttta 38595673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 40610968 - 40611016
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataat 217  Q
    ||||||||||||| |||||| || ||||||| |||||||||| ||||||    
T  40610968 tcattattataaataaaaattaacattttaaattcattcaataaataat 40611016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 452
Target Start/End: Complemental strand, 42720887 - 42720859
Alignment:
Q  424 tctccatttctttcatttagagagataaa 452  Q
    |||||||||||||||||||||||||||||    
T  42720887 tctccatttctttcatttagagagataaa 42720859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 167 - 223
Target Start/End: Original strand, 43728191 - 43728247
Alignment:
Q  167 agtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    ||||| ||||||||||||||||| |||||||| ||| ||| ||||||| || |||||    
T  43728191 agtcactattataaacaaaaatctatattttaggttaatttaattaatgatatatat 43728247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 41387847 - 41387772
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||| ||| ||| |||| | ||||||||||||||||    
T  41387847 tgtatgtggtctttattataaaccacgtacatcatttaataaattaatctaaaatgtagtttttttgcttataata 41387772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 7484672 - 7484750
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||| || ||||||||  ||||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||||||    
T  7484672 tgtatatcgtctttattatcgaccacatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataataatga 7484750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 24017773 - 24017847
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||| | ||||||| | ||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  24017773 tgtatatgatctttattacagaccacatacatcatttaattaataaatctaaaatgttga-tttttgcttataata 24017847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 44098996 - 44099045
Alignment:
Q  166 tagtcattattataaacaaaaatcaatattttaagttcattcaattaata 215  Q
    |||||||||||||||||||||||||| ||||||| |||||||||| ||||    
T  44098996 tagtcattattataaacaaaaatcaacattttaaattcattcaataaata 44099045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 305
Target Start/End: Complemental strand, 1897932 - 1897865
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||| || |||||||| ||||||| ||||||||||| || |||| |||||||||||||||||||    
T  1897932 tttattatagacaacatacattatttaatgaataaatataaaatattga-tttttgcttataataatga 1897865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 18603513 - 18603577
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||||||| ||| ||||| ||||||    
T  18603513 tgtatatgatctttattatataccacatacatcatttaattaataaatctaaaatgttaattttt 18603577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 305
Target Start/End: Original strand, 25267981 - 25268108
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataa 267  Q
    |||||||||||||||||||||| | ||||||  |||||| ||||||| ||          |||||| | |||||||||||||| ||||||||||||||||    
T  25267981 gtcattattataaacaaaaatctacattttagattcatttaattaatgat----------tatatgatctttattataaaccatatacatcatttaataa 25268070  T
Q  268 ataaatat-aatatgttgattttttgcttataataatga 305  Q
    |||||| | || ||  |||||||||| ||||||||||||    
T  25268071 ataaatctaaaaataatgattttttg-ttataataatga 25268108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 45045506 - 45045455
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||||||||||| ||||||||  |||||||||||||| |||||||||    
T  45045506 tattataaacaaaaatctatattttagattcattcaattaatgatgtatatg 45045455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 33385245 - 33385192
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||| |||||||||||||||||| |||||||| ||| ||||| ||||||    
T  33385245 tttattatagaccacatacatcatttaaaaaataaatctaaaatgttaattttt 33385192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 10934669 - 10934732
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||| || ||||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  10934669 tttattgtagaccacatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataata 10934732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 11295719 - 11295783
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||| |||| ||||||||||||||||| ||||||||||| ||| ||| ||| ||||| ||||||    
T  11295719 tgtatgtggtctttattataaaccacatgcatcatttaatgaatgaatctaaaatgttaattttt 11295783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 27502975 - 27502912
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||||| ||| ||| ||| ||||| | |||||||||||||||    
T  27502975 tttattataaatcacatacatcatttaatgaatgaatttaaaatgtt-aatttttgcttataata 27502912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 412 - 452
Target Start/End: Original strand, 33709142 - 33709182
Alignment:
Q  412 gagttaagatcctctccatttctttcatttagagagataaa 452  Q
    |||| ||||||||||||||||||||||||| ||||||||||    
T  33709142 gagtcaagatcctctccatttctttcatttggagagataaa 33709182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 3225835 - 3225913
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||| ||   || || |||| |||||||||||||||||||    
T  3225835 tgtatatgatctttattatagaccacatacatcatttaatgaatgaaccaaaaatattga-tttttgcttataataatga 3225913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 5888421 - 5888347
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||| || |||||||||||||||| ||| ||| ||| | ||| | |||||||||||||||    
T  5888421 tgtatatggtctttattatagacaacatacatcatttaatgaatgaatctaaaacgtt-aatttttgcttataata 5888347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 9015949 - 9015894
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||||||  ||||||| ||||||||  |||||||||||||| |||||||||    
T  9015949 tcattattataagtaaaaatctatattttagattcattcaattaatgatgtatatg 9015894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 277
Target Start/End: Complemental strand, 23575050 - 23574999
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataa 277  Q
    |||||||||| ||||||||| ||||||||   ||||||||||||||||||||    
T  23575050 tgtatatggtctttattatataccacatatgacatttaataaataaatataa 23574999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 34580657 - 34580618
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaat 265  Q
    |||||||||| ||||||||||||||||||||| |||||||    
T  34580657 tgtatatggtctttattataaaccacatacataatttaat 34580618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 219
Target Start/End: Complemental strand, 41753892 - 41753841
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgt 219  Q
    |||| |||||||||||||||| |||||||||  |||||||||||||| ||||    
T  41753892 gtcactattataaacaaaaattaatattttagattcattcaattaatgatgt 41753841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 276
Target Start/End: Complemental strand, 10117055 - 10117005
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatata 276  Q
    |||||||| | ||||||||| ||||||||||||||||||| ||| ||||||    
T  10117055 tgtatatgatatttattatagaccacatacatcatttaatgaatgaatata 10117005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 210
Target Start/End: Original strand, 34057389 - 34057431
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaat 210  Q
    |||||| ||||||||||||| |||||||||||| |||||||||    
T  34057389 gtcatttttataaacaaaaaacaatattttaagctcattcaat 34057431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 41753830 - 41753769
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||| ||||||||||||||||||| ||| ||| ||| |||||||  ||||||||||||||    
T  41753830 tattatagaccacatacatcatttaatgaatgaatttaaaatgttga-attttgcttataata 41753769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 1897864 - 1897917
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||| |||||||||||||||||  || ||||| | ||||||||||    
T  1897864 gtcattattataagcaaaaatcaatattttatatttattcattaaataatgtat 1897917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 221
Target Start/End: Original strand, 3687559 - 3687604
Alignment:
Q  176 tataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||| |||||||||| || ||||||| ||||||||||    
T  3687559 tataaacaaaaattaatattttaaatttattcaataaataatgtat 3687604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 13080222 - 13080169
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||||||||||||||||||||| | ||||||  |||||| ||||||| ||||||    
T  13080222 gtcattattataaacaaaaatctacattttacattcattgaattaatgatgtat 13080169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Complemental strand, 17871901 - 17871844
Alignment:
Q  164 tctagtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||||||| |||||||| ||||||||||| ||||| ||||||||| | ||| ||||||    
T  17871901 tctagtcactattataagcaaaaatcaattttttaggttcattcattaaatgatgtat 17871844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 17923738 - 17923685
Alignment:
Q  238 ttattataaaccacatacatcatttaataaataaa-tataatatgttgattttt 290  Q
    ||||||||||| |||||||||||||||| |||||| | ||| ||||||||||||    
T  17923738 ttattataaacaacatacatcatttaatgaataaattttaaaatgttgattttt 17923685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 92769 - 92817
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||||||||| | ||||  |||||||| ||||||||||||    
T  92769 tattataaacaaaaatcaacaatttagattcattcatttaataatgtat 92817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 2805898 - 2805815
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaatgaa 310  Q
    |||||||| | ||||||||| |||||||| |||||||||||||| |||  || ||| | |  |||||||||||||||||| ||||    
T  2805898 tgtatatgatctttattatagaccacatatatcatttaataaatgaatccaaaatg-taaaattttgcttataataatgactgaa 2805815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 3225913 - 3225861
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||||||||||| ||||||||||||||||  ||||||||| | ||| ||||||    
T  3225913 tcattattataagcaaaaatcaatatttttggttcattcattaaatgatgtat 3225861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 305
Target Start/End: Original strand, 10815512 - 10815579
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||||||||||||||||  |||||| ||| ||| | | || |||| |||||||||||||||||||    
T  10815512 tttattataaaccacatacattttttaattaatgaatctcaaatattga-tttttgcttataataatga 10815579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 228 - 272
Target Start/End: Complemental strand, 14599724 - 14599680
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaa 272  Q
    |||||||| | ||| ||||||||||||||||||||| ||||||||    
T  14599724 tatatggtatatataataaaccacatacatcatttattaaataaa 14599680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 24842078 - 24842126
Alignment:
Q  242 tataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||| ||||||||||||||||||||||||||| ||| || | |||||||    
T  24842078 tatagaccacatacatcatttaataaataaatctaaaatatcgattttt 24842126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 412 - 440
Target Start/End: Original strand, 26399871 - 26399899
Alignment:
Q  412 gagttaagatcctctccatttctttcatt 440  Q
    |||||||||||||||||||||||||||||    
T  26399871 gagttaagatcctctccatttctttcatt 26399899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 35874520 - 35874583
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||| || ||||||||||| ||||||||||||||||| ||| ||| ||| | ||||||||||    
T  35874520 tgtatatagtctttattataaatcacatacatcatttaattaatgaatgtaa-aagttgattttt 35874583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 36916649 - 36916685
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaat 273  Q
    ||||||||| ||||||||||| |||||||||||||||    
T  36916649 tttattatagaccacatacattatttaataaataaat 36916685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 42795203 - 42795171
Alignment:
Q  194 ttttaagttcattcaattaataatgtatatgtt 226  Q
    ||||||||||||||||||||| |||||||||||    
T  42795203 ttttaagttcattcaattaatgatgtatatgtt 42795171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 1961364 - 1961438
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||| ||||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  1961364 tgtatatggtctttattatagaccacatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataata 1961438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 10602379 - 10602305
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||| ||||||||||| ||||| |||||||||  ||||||||||| ||||||||||||||    
T  10602379 tgtatatggtctttattatagaccacatacattatttactaaataaatcgaatatgttgat-ttttgcttataata 10602305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 167 - 290
Target Start/End: Original strand, 32630411 - 32630525
Alignment:
Q  167 agtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaata 266  Q
    ||||||||||||||||||||||| | |||||   |||||||||||||| |||||||||         || ||||||||| || ||||||||||||||||     
T  32630411 agtcattattataaacaaaaatctacattttggattcattcaattaatgatgtatatg---------gtctttattatagactacatacatcatttaatg 32630501  T
Q  267 aataaatataatatgttgattttt 290  Q
    ||||||| ||| ||||||||||||    
T  32630502 aataaatctaaaatgttgattttt 32630525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 19951574 - 19951523
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||    
T  19951574 tattataaacaaaaatcaatattttatattcattcaattaatgatgtatatg 19951523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 38465874 - 38465800
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||  ||||||||||||||||||| ||| ||| ||| |||||||| ||||||||||||||    
T  38465874 tgtatatggtctttattatggaccacatacatcatttaatgaattaatctaaaatgttgat-ttttgcttataata 38465800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 290
Target Start/End: Original strand, 4563886 - 4563983
Alignment:
Q  191 atattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||  |||||||||||||||||||||||  |  ||||||| |||||||||   |||||||||||||||||| || ||| ||| || |||||||||    
T  4563886 atattttagattcattcaattaataatgtatataat--atatggtctttattatatgtcacatacatcatttaatagatgaatctaaaatattgattttt 4563983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 15859685 - 15859629
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||||||| |||||||| ||||||||  |||||||||||||| |||||||||    
T  15859685 gtcattattataagcaaaaatctatattttagattcattcaattaatgatgtatatg 15859629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 2050145 - 2050188
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaat 269  Q
    |||||||| | |||||||||||||||||||||||||||||||||    
T  2050145 tgtatatgatctttattataaaccacatacatcatttaataaat 2050188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 208
Target Start/End: Complemental strand, 6648220 - 6648181
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattca 208  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  6648220 tcattattataaacaaaaatcaatattttatgttcattca 6648181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 15119862 - 15119788
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||| || ||||||||| ||||||||||||||||||| ||| ||| ||| ||||| | |||||||||||||||    
T  15119862 tgtatattgtctttattatagaccacatacatcatttaatgaatgaatctaaaatgtt-aatttttgcttataata 15119788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 31024256 - 31024182
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||| || ||||||||  ||||||||||||||||||| ||| ||| ||| |||||||| ||||||||||||||    
T  31024256 tgtatatcgtctttattatcgaccacatacatcatttaatgaatgaatctaaaatgttgat-ttttgcttataata 31024182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 231 - 305
Target Start/End: Original strand, 21488087 - 21488160
Alignment:
Q  231 atggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||| ||||||||||||||||||||||||| ||| ||| ||| ||| ||| | |||||||||||||| ||||||    
T  21488087 atggtctttattataaaccacatacatcattaaatgaatgaatctaaaatg-taattttttgcttatattaatga 21488160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 174 - 303
Target Start/End: Original strand, 8383197 - 8383316
Alignment:
Q  174 attataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataaataaat 273  Q
    |||||||||||||||| ||||||||  |||||||| |||||||         |||| ||||| ||||||||| | ||||||||||||| ||||||| |||    
T  8383197 attataaacaaaaatctatattttagattcattcatttaataa---------tgtacatggtctttattatagatcacatacatcattaaataaatgaat 8383287  T
Q  274 ataatatgttgattttttgcttataataat 303  Q
     ||| |||| | ||||||||||||| ||||    
T  8383288 ctaaaatgtag-ttttttgcttatattaat 8383316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 11093615 - 11093551
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||| || ||||||||| ||||||||||||||||||| ||| ||| ||| || |||||||||    
T  11093615 tgtatatagtctttattatagaccacatacatcatttaatgaatcaatctaaaatattgattttt 11093551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 6166156 - 6166101
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||| ||||||||||||||| | ||||||| |||||||||| ||| |||||||||    
T  6166156 tcattgttataaacaaaaatctacattttaaattcattcaataaattatgtatatg 6166101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 7079455 - 7079381
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| || |||||| |||||||| ||||||||||  || ||| ||| |||||||| ||||||||||||||    
T  7079455 tgtatatggtcttaattatagaccacatatatcatttaatggatgaatttaaaatgttgat-ttttgcttataata 7079381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 10996253 - 10996308
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||||| |||||||  ||||||||| |||||| ||||||| |||||||||    
T  10996253 tcattattataagcaaaaatttatattttaaattcattgaattaatgatgtatatg 10996308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 23377997 - 23378075
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||| | |||||| || | ||||||||||||||||||||| ||| ||| || || | |||||||||||||||||||    
T  23377997 tgtatatgatctttattgtagatcacatacatcatttaataaatgaatctaaaatatt-aatttttgcttataataatga 23378075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 282
Target Start/End: Complemental strand, 32143490 - 32143435
Alignment:
Q  227 gtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgt 282  Q
    |||||| || ||||| ||||||||||||||||||||||||||| ||| ||| ||||    
T  32143490 gtatatagtctttatcataaaccacatacatcatttaataaatgaatttaaaatgt 32143435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 33555232 - 33555310
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||| | ||||| ||| | |||||||||||||| || ||||||| ||| ||||||| |||||| ||||||||||||    
T  33555232 tgtatatgctctttatcatagatcacatacatcattttatgaataaatctaaaatgttga-tttttgtttataataatga 33555310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 37195107 - 37195146
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaat 265  Q
    |||||||||| ||||||||| |||||||||||||||||||    
T  37195107 tgtatatggtctttattatagaccacatacatcatttaat 37195146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 38181845 - 38181767
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||| || |||||| || | ||||||||||||||||| ||| ||| ||| || |||| |||||||||||||||||||    
T  38181845 tgtatatagtctttattgtagatcacatacatcatttaatgaatgaatctaaaatattga-tttttgcttataataatga 38181767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 38581009 - 38581064
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    |||||||||||||  ||||||| ||||||||  ||||||||||||||| |||||||    
T  38581009 gtcattattataagtaaaaatctatattttatattcattcaattaatattgtatat 38581064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 3098194 - 3098255
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| |||| || |||||||||||||||    
T  3098194 tattataaaccgcatacatcatttaatgaatgaatctaaaatgtaga-tttttgcttataata 3098255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 301
Target Start/End: Complemental strand, 3121506 - 3121433
Alignment:
Q  227 gtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||| || ||||||||| | ||||||||| ||||||||||| ||| ||| || |||| |||||||||||||||    
T  3121506 gtatattgtttttattatagatcacatacattatttaataaatgaatctaaaatattga-tttttgcttataata 3121433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 13333515 - 13333576
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| |||| || |||||||||||||||    
T  13333515 tattataaaccgcatacatcatttaatcaatgaatctaaaatgtaga-tttttgcttataata 13333576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 237 - 299
Target Start/End: Original strand, 21183393 - 21183454
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataa 299  Q
    |||||| || ||||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||    
T  21183393 tttattgtagaccacatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataa 21183454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 25270924 - 25270985
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| |||| || |||||||||||||||    
T  25270924 tattataaaccgcatacatcatttaatgaatgaatctaaaatgtaga-tttttgcttataata 25270985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 300
Target Start/End: Complemental strand, 26003520 - 26003447
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataat 300  Q
    |||||||||| ||||||||| || |||||||||||||||| ||| ||  ||| || |||| ||||||||||||||    
T  26003520 tgtatatggtctttattatatactacatacatcatttaatgaatgaacctaaaatattga-tttttgcttataat 26003447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 223
Target Start/End: Original strand, 40590948 - 40591002
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    |||| |||||||| |||||| |||||||||| |||||||||||||| || |||||    
T  40590948 tcatcattataaataaaaattaatattttaaattcattcaattaatgatatatat 40591002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Original strand, 41056956 - 41057017
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| |||| || |||||||||||||||    
T  41056956 tattataaaccgcatacatcatttaatgaatgaatctaaaatgtaga-tttttgcttataata 41057017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 283
Target Start/End: Original strand, 800748 - 800805
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgtt 283  Q
    |||||||| | |||||||||||||| |||||||||||||| ||| ||| ||| |||||    
T  800748 tgtatatgatttttattataaaccatatacatcatttaatgaatgaatttaaaatgtt 800805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 2144145 - 2144194
Alignment:
Q  175 ttataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||||||||  | |||||||||||||| ||| |||||||||||||    
T  2144145 ttataaacaaaaattcacattttaagttcatttaataaataatgtatatg 2144194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 301
Target Start/End: Original strand, 13304547 - 13304592
Alignment:
Q  256 atcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||||||||||| |||  |||| |||||||||||||||||    
T  13304547 atcatttaataaataaatttaaactgttaattttttgcttataata 13304592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 15916739 - 15916792
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||| |||||||| |||||||||||||||||  |||||||| | ||||||||||    
T  15916739 gtcagtattataagcaaaaatcaatattttagattcattcattaaataatgtat 15916792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 18479395 - 18479342
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||| |||||||| || |||||| |||||||| ||| ||||||||||||    
T  18479395 tttattatagaccacatatattatttaacaaataaatctaaaatgttgattttt 18479342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 27331893 - 27331840
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||| |||||||| |||||||||| ||||||  |||||||||||||| ||||||    
T  27331893 gtcactattataagcaaaaatcaacattttagattcattcaattaatgatgtat 27331840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 31102006 - 31102043
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaat 265  Q
    |||||| | |||||||||||||||||||||||||||||    
T  31102006 tatatgatctttattataaaccacatacatcatttaat 31102043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 33129201 - 33129156
Alignment:
Q  175 ttataaacaaaaatcaatattttaagttcattcaattaataatgta 220  Q
    |||||| ||||| ||||||||||||||||||||| | |||||||||    
T  33129201 ttataagcaaaactcaatattttaagttcattcattaaataatgta 33129156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 38181766 - 38181819
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||| |||||||||||||||||  |||||||| | ||| ||||||    
T  38181766 gtcattattataagcaaaaatcaatattttagattcattcattaaatgatgtat 38181819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 214
Target Start/End: Original strand, 44868523 - 44868564
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaat 214  Q
    ||||||||||||||||||| ||||||| || |||||||||||    
T  44868523 tattataaacaaaaatcaacattttaaatttattcaattaat 44868564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 596161 - 596105
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| ||||||||||||||||||| |||| || |||||| | | |||||||||||||    
T  596161 gtcactattataaacaaaaatcaacatttcaaattcatttattaaataatgtatatg 596105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 25899904 - 25899940
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaat 273  Q
    |||||||||||| |||||| |||||||||||||||||    
T  25899904 tttattataaactacatacgtcatttaataaataaat 25899940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 32460808 - 32460844
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaat 273  Q
    ||||||||| | |||||||||||||||||||||||||    
T  32460808 tttattatagaacacatacatcatttaataaataaat 32460844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 452
Target Start/End: Complemental strand, 41073069 - 41073041
Alignment:
Q  424 tctccatttctttcatttagagagataaa 452  Q
    |||||||||||||||||||||||||||||    
T  41073069 tctccatttctttcatttagagagataaa 41073041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 26)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 301
Target Start/End: Complemental strand, 12104828 - 12104756
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||| || ||||||||||| ||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||    
T  12104828 tatatagtctttattataaatcacatacatcatttaataaatgaatttaaaatgttgat-ttttgcttataata 12104756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 15517145 - 15517223
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||| || ||||||||| ||||||||||||||||||| ||| ||| ||| || |||| |||||||||||||||||||    
T  15517145 tgtatatcgtctttattatagaccacatacatcatttaatgaatgaatctaaaatattga-tttttgcttataataatga 15517223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 31996554 - 31996628
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||| || |||||||||||||||||||| ||  ||| ||||||| |||||||||||||||    
T  31996554 tgtatatggtatttattatagactacatacatcatttaataaatgaacctaaaatgttga-tttttgcttataata 31996628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 33689235 - 33689290
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    |||| |||||||| |||||||||||||||||  |||||||||||||||||||||||    
T  33689235 gtcactattataagcaaaaatcaatattttatattcattcaattaataatgtatat 33689290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 26527256 - 26527324
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaa 306  Q
    ||||||||||||||||||||||||||||| ||| ||| ||| ||||| | ||||||||||||||| ||||    
T  26527256 tttattataaaccacatacatcatttaatgaatgaatctaaaatgtt-aatttttgcttataatagtgaa 26527324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 301
Target Start/End: Complemental strand, 11745997 - 11745934
Alignment:
Q  238 ttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||| ||||||||||||||||||| ||| ||| ||| || ||||| ||||||||||||||    
T  11745997 ttattatataccacatacatcatttaatgaatgaatctaaaatattgatattttgcttataata 11745934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 34379790 - 34379864
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||| || ||||||||  ||||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  34379790 tgtatatcgtctttattatcgaccacatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataata 34379864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 3199803 - 3199738
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgatttttt 291  Q
    |||||||| | |||||||||||||||||||| |||||||| ||| ||| ||| || ||||||||||    
T  3199803 tgtatatgatctttattataaaccacatacaacatttaatgaatgaatttaaaatattgatttttt 3199738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 10258389 - 10258325
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||||  |||||||| ||||  ||||||||||||||||| ||| ||| ||||||||||||    
T  10258389 tgtatatggtcattattatagaccatgtacatcatttaataaatgaatctaaaatgttgattttt 10258325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 10788119 - 10788071
Alignment:
Q  219 tatatgttgtatatggtgtttattataaaccacatacatcatttaataa 267  Q
    ||||| ||||||||||| ||||||||| ||||||||||| |||||||||    
T  10788119 tatattttgtatatggtctttattatagaccacatacataatttaataa 10788071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 290
Target Start/End: Original strand, 29122463 - 29122521
Alignment:
Q  232 tggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||| ||||||||||||||| ||||| || |||||||| ||| ||| ||||||||||||    
T  29122463 tggtctttattataaaccacgtacattatataataaatgaatttaaaatgttgattttt 29122521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 224
Target Start/End: Original strand, 31996511 - 31996561
Alignment:
Q  174 attataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||| |||||||||| |||| |  ||||||||||||||||||||||||    
T  31996511 attataagcaaaaatcaacatttcagattcattcaattaataatgtatatg 31996561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Original strand, 3203677 - 3203730
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||| |||||||| ||||||||||| ||||| ||||||||||| ||| ||||||    
T  3203677 gtcactattataagcaaaaatcaattttttaggttcattcaatgaatgatgtat 3203730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 15517224 - 15517171
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||| |||||||||||||||||  |||||||| | ||| ||||||    
T  15517224 gtcattattataagcaaaaatcaatattttagattcattcattaaatgatgtat 15517171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 29072130 - 29072089
Alignment:
Q  249 cacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||    
T  29072130 cacatacatcatttaataaatgaatttaaaatgttgattttt 29072089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 29104703 - 29104662
Alignment:
Q  249 cacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||||||||||||||| ||| ||| ||||||||||||    
T  29104703 cacatacatcatttaataaatgaatttaaaatgttgattttt 29104662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 248 - 305
Target Start/End: Original strand, 29419864 - 29419920
Alignment:
Q  248 ccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||||||||||||| ||| ||| ||| ||||||| ||||| |||||||||||||    
T  29419864 ccacatacatcatttaatgaatgaatctaaaatgttga-tttttacttataataatga 29419920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 31158917 - 31158864
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||| ||||||||||| ||| ||| ||||||| ||| ||||||||||||    
T  31158917 tttattatagaccacatacattattcaattaataaatctaaaatgttgattttt 31158864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 298
Target Start/End: Complemental strand, 8146034 - 8145962
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttata 298  Q
    |||| ||||| ||||||||| ||||||||||||||| ||| ||| ||  ||| |||| | |||||||||||||    
T  8146034 tgtacatggtctttattatagaccacatacatcattaaatgaatgaacctaaaatgtagtttttttgcttata 8145962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 8449710 - 8449654
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| |||||||| ||||||| |||||||||  |||||||||||||| ||| |||||    
T  8449710 gtcactattataagcaaaaattaatattttagattcattcaattaatgatgcatatg 8449654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Complemental strand, 8458514 - 8458458
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| |||||||| ||||||| |||||||||  |||||||||||||| ||| |||||    
T  8458514 gtcactattataagcaaaaattaatattttagattcattcaattaatgatgcatatg 8458458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 12218519 - 12218456
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||| |  ||||| |||||||||| ||| ||||||| |||||||| ||||||||||||||    
T  12218519 tttattatagattacatatatcatttaatgaatgaatataaaatgttgat-ttttgcttataata 12218456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 13281540 - 13281596
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| |||||||| |||||||| | ||||||  |||||||||||||| |||||||||    
T  13281540 gtcactattataagcaaaaatctagattttagattcattcaattaatgatgtatatg 13281596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 13506889 - 13506966
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||| | ||||||||| || | || ||||||||||| ||||||| ||| |||||   |||||||||||||||||||    
T  13506889 tgtatatgatctttattatagactagatgcatcatttaatgaataaatttaaaatgtt--atttttgcttataataatga 13506966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 20704034 - 20704078
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataat 217  Q
    |||||||| |||||||||||||||||| |||||||| | ||||||    
T  20704034 tattataatcaaaaatcaatattttaaattcattcattcaataat 20704078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 424 - 452
Target Start/End: Original strand, 27095960 - 27095988
Alignment:
Q  424 tctccatttctttcatttagagagataaa 452  Q
    |||||||||||||||||||||||||||||    
T  27095960 tctccatttctttcatttagagagataaa 27095988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 41)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 41254005 - 41253952
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||    
T  41254005 tttattataaaccacatacatcatttaatgaatgaatataaaatgttgattttt 41253952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 37807595 - 37807531
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| ||||||||||||||||||||||||| ||| ||||||| ||| ||||| ||||||    
T  37807595 tgtatatggtctttattataaaccacatacatcattcaatgaataaatttaaaatgttaattttt 37807531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 50745051 - 50744987
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||| || ||||||||||| ||||||||||||||||||||||||| ||| ||||||| ||||    
T  50745051 tgtatatagtatttattataaatcacatacatcatttaataaataaatctaaaatgttgactttt 50744987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 10872757 - 10872683
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||||| ||||||||||||||||| ||| ||| ||| || |||| |||||||||||||||    
T  10872757 tgtatatggtctttattataaatcacatacatcatttaatgaatgaatttaaaatattga-tttttgcttataata 10872683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 20625310 - 20625260
Alignment:
Q  240 attataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||||||||    
T  20625310 attataaaccacatacatcatttaataaatgaatttaaaatgttgattttt 20625260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 38893300 - 38893247
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||||||||||| ||||||||| |||| ||||||| ||||||||||||    
T  38893300 tttattataaaccacatatatcatttaacaaatgaatataaaatgttgattttt 38893247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 40169130 - 40169081
Alignment:
Q  172 ttattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||| ||||||| ||| ||||||||||||||||||||||||||||    
T  40169130 ttattataagcaaaaattaattttttaagttcattcaattaataatgtat 40169081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 318
Target Start/End: Original strand, 40639865 - 40639941
Alignment:
Q  241 ttataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaatgaaatgtgtat 318  Q
    ||||| ||||||||||||||||||| ||||||| ||| ||||||| ||||||||||||||| |||  |||| ||||||    
T  40639865 ttatagaccacatacatcatttaatgaataaatttaaaatgttga-tttttgcttataatagtgatcgaaaggtgtat 40639941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 331872 - 331810
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||| ||||||||||||||||||| ||||||| ||| ||||||| |||||||||||||||    
T  331872 tttattatagaccacatacatcatttaatcaataaat-taaaatgttga-tttttgcttataata 331810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 3020699 - 3020635
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||| || ||||||||| | || |||||||||||||||||||||||||| |||||| |||||    
T  3020699 tgtatatagtctttattatatatcatatacatcatttaataaataaatataaaatgttggttttt 3020635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 226 - 310
Target Start/End: Complemental strand, 24722772 - 24722689
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaatgaa 310  Q
    ||||||| || ||||||||| ||||||||||||||||||||||| ||| ||| || || | ||||||||||||||| ||| ||||    
T  24722772 tgtatattgtatttattatagaccacatacatcatttaataaatgaatctaaaatatt-aatttttgcttataatagtgactgaa 24722689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 6124204 - 6124149
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    |||||||||||||  |||||||||||||| | ||||||| ||||||||||||||||    
T  6124204 gtcattattataagtaaaaatcaatatttgaggttcattaaattaataatgtatat 6124149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 317
Target Start/End: Complemental strand, 7823952 - 7823862
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaatgaaatgtgta 317  Q
    ||||||||||  |||||||| | || |||||||||||||||||| ||| ||| ||||| |||| |||||||||||| ||| ||||| |||||    
T  7823952 tgtatatggtcattattatagatcaaatacatcatttaataaatgaatctaaaatgtt-atttattgcttataatagtgattgaaaggtgta 7823862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 12744956 - 12745030
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||  || ||| ||||| | |||||||||||||||    
T  12744956 tgtatatggtctttattatagaccacatacatcatttaatgaatgtatctaaaatgtt-aatttttgcttataata 12745030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 19810945 - 19810984
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaat 265  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  19810945 tgtatatggtctttattataaaccacatacatcatttaat 19810984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 26121594 - 26121641
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaat 273  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  26121594 tgtatatggtctttattatagaccacatacatcatttaatgaataaat 26121641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 273
Target Start/End: Original strand, 26244435 - 26244482
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaat 273  Q
    |||||||||| ||||||||| ||||||||||||||||||| |||||||    
T  26244435 tgtatatggtctttattatagaccacatacatcatttaatgaataaat 26244482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 37897737 - 37897811
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||| | ||||||||| ||||||||||| ||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  37897737 tgtatatgatctttattatagaccacatacataatttaatgaatgaatttaaaatgttga-tttttgcttataata 37897811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Original strand, 52215935 - 52216009
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||| | ||||||||| ||||||||||||||||||| | | ||| ||| ||||||| |||||||||||||||    
T  52215935 tgtatatgatctttattatagaccacatacatcatttaatgagtgaatctaaaatgttga-tttttgcttataata 52216009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 54595875 - 54595801
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||| || ||||||||  ||||||||||||||||||| ||| ||| ||| |||||||| ||||||||||||||    
T  54595875 tgtatatcgtctttattatcgaccacatacatcatttaatgaatgaatctaaaatgttgat-ttttgcttataata 54595801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 305
Target Start/End: Original strand, 12109890 - 12109967
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||| | ||||||||| ||||||||||||| ||||| ||| ||  ||| ||||||||||||| |||| ||||||||    
T  12109890 tatatgatctttattatagaccacatacatcaattaatgaatgaaactaaaatgttgatttttttcttaaaataatga 12109967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 27224654 - 27224601
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||| | ||||||||||||||||| ||||||| ||| ||||||||||||    
T  27224654 tttattatagatcacatacatcatttaatgaataaatctaaaatgttgattttt 27224601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 48191789 - 48191736
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||||||||||||||||||||||||||| ||| ||| ||| ||||| ||||||    
T  48191789 tttattataaaccacatacatcatttaatgaatgaatctaaaatgttaattttt 48191736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 54690931 - 54690870
Alignment:
Q  204 attcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaat 265  Q
    ||||| ||||| || |||||| | |||||||| |||||||||||||| ||||||||||||||    
T  54690931 attcatttaatgatatatatgatatatatggtctttattataaaccatatacatcatttaat 54690870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 286
Target Start/End: Complemental strand, 29222888 - 29222828
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgat 286  Q
    |||||||| | ||||||||| || |||||||||||||||||||| ||| ||| ||||||||    
T  29222888 tgtatatgatctttattatagacaacatacatcatttaataaatgaatctaaaatgttgat 29222828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 269
Target Start/End: Original strand, 14756463 - 14756506
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaat 269  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||    
T  14756463 tgtatatggtctttattatagaccacatacatcattaaataaat 14756506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 305
Target Start/End: Complemental strand, 27668712 - 27668633
Alignment:
Q  227 gtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttga-ttttttgcttataataatga 305  Q
    |||| |||| ||||||||| || ||||||||||| |||||||| ||||||| ||  ||| |||||| |||||||||||||    
T  27668712 gtatgtggtctttattatagacaacatacatcatctaataaatgaatataaaattatgattttttttcttataataatga 27668633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 305
Target Start/End: Original strand, 41254010 - 41254064
Alignment:
Q  250 acatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||||||||||||||||  || ||| ||||||| |||||||||||||||||||    
T  41254010 acatacatcatttaataaatgtatctaaaatgttga-tttttgcttataataatga 41254064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 52866491 - 52866425
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttga--ttttttgcttataata 301  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||| ||||| |  ||||||||||||||||    
T  52866491 tttattatagaccacatacatcatttaatgaatgaatctaaaatgttaattttttttgcttataata 52866425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 10872677 - 10872731
Alignment:
Q  167 agtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||| |||||||| |||||||||||||||||| |||||||| | ||| ||||||    
T  10872677 agtcactattataagcaaaaatcaatattttaaattcattcattaaatgatgtat 10872731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 21217238 - 21217177
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| |||| || |||||||||||||||    
T  21217238 tattataaaccgcatacatcatttaatgaatgaatctaaaatgtaga-tttttgcttataata 21217177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 301
Target Start/End: Complemental strand, 9170191 - 9170123
Alignment:
Q  232 tggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||| ||||||||||||||| ||||||||||||  ||| ||| ||| ||| | |||||||||||||||||    
T  9170191 tggtctttattataaaccacgtacatcatttaacgaatgaatctaaaatg-taattttttgcttataata 9170123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 269
Target Start/End: Complemental strand, 33613511 - 33613470
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaataaat 269  Q
    |||||||| ||||||||| ||||||||||| |||||||||||    
T  33613511 tatatggtctttattatataccacatacataatttaataaat 33613470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 50603647 - 50603594
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||| |||||||| |||||||| || ||||||||||||||||| ||| ||||||    
T  50603647 gtcactattataagcaaaaatctattttttaagttcattcaataaatgatgtat 50603594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 171 - 224
Target Start/End: Complemental strand, 51253801 - 51253748
Alignment:
Q  171 attattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||| ||||||| |||||| ||  |||||||||| |||||||||||||    
T  51253801 attattataagcaaaaattaatattgtagattcattcaatcaataatgtatatg 51253748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 237 - 318
Target Start/End: Complemental strand, 54783451 - 54783371
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaatgaaatgtgtat 318  Q
    ||||||||| ||||||||||||| ||||| ||| ||| ||| ||||| | |||||| |||||||| ||| ||||| ||||||    
T  54783451 tttattatagaccacatacatcaattaattaatgaatctaaaatgtt-aatttttgtttataatagtgactgaaaggtgtat 54783371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 11472314 - 11472342
Alignment:
Q  237 tttattataaaccacatacatcatttaat 265  Q
    |||||||||||||||||||||||||||||    
T  11472314 tttattataaaccacatacatcatttaat 11472342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 24597022 - 24596970
Alignment:
Q  171 attattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    ||||||||||  ||||||  |||||||||||||||| ||| ||||||||||||    
T  24597022 attattataagaaaaaattcatattttaagttcattgaataaataatgtatat 24596970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 273
Target Start/End: Original strand, 26243745 - 26243781
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaat 273  Q
    ||||||||| ||||||||||||||||||| |||||||    
T  26243745 tttattatagaccacatacatcatttaatgaataaat 26243781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 194 - 261
Target Start/End: Complemental strand, 26770829 - 26770761
Alignment:
Q  194 ttttaagttcattcaattaataatgtatatgttgtata-tggtgtttattataaaccacatacatcatt 261  Q
    ||||| ||||||||||||||| |||||| || | |||  |||| | |||||||||||||||||||||||    
T  26770829 ttttaggttcattcaattaatgatgtatgtggtttattgtggtctatattataaaccacatacatcatt 26770761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Original strand, 51060718 - 51060782
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | ||||||||| | ||| ||||||||||||||||| ||| ||| || |||||||||    
T  51060718 tgtatatgatctttattatatatcacgtacatcatttaataaattaatctaaaatattgattttt 51060782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 40542 - 40474
Alignment:
Q  222 atgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||||| | ||||||||| ||| ||||||||||||||| ||||||| ||| ||||||||||||    
T  40542 atgttgtatatgatctttattatagaccgcatacatcatttaatgaataaatctaaaatgttgattttt 40474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 173 - 224
Target Start/End: Complemental strand, 6803502 - 6803451
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||||||||||||||||||||| ||||||||||| || |||||||||    
T  6803502 tattataaacaaaaatcaatattttaaattcattcaattgatgatgtatatg 6803451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 173 - 289
Target Start/End: Original strand, 3882818 - 3882929
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataaataaa 272  Q
    |||||||||||||||| |||||||||  |||||||||||||| |     ||| ||||| | || ||||||||| ||||||||||| ||| ||| ||| ||    
T  3882818 tattataaacaaaaattaatattttagattcattcaattaatta-----atgatgtatttagtctttattatagaccacatacataattcaatgaatgaa 3882912  T
Q  273 tataatatgttgatttt 289  Q
    | ||| |||||||||||    
T  3882913 tctaaaatgttgatttt 3882929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 7295107 - 7295189
Alignment:
Q  222 atgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||| | |||| ||||||||| | ||||||||||||||||||||| ||| ||| ||||| | |||||| ||||||||||||    
T  7295107 atgttgtttgtggtctttattatatatcacatacatcatttaataaatgaatgtaaaatgtt-aatttttgtttataataatga 7295189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 301
Target Start/End: Complemental strand, 10095804 - 10095730
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||||||| ||||| ||| ||||||||||||||||||| ||| ||| ||| ||||| | |||||||||||||||    
T  10095804 tgtatatggtctttatcatagaccacatacatcatttaatgaatgaatctaaaatgtt-aatttttgcttataata 10095730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 28289479 - 28289542
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgatttt 289  Q
    |||||||| | |||||  |||||||||| ||||| ||||||||||||||||| |||||||||||    
T  28289479 tgtatatgatctttatcgtaaaccacatgcatcacttaataaataaatataaaatgttgatttt 28289542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 164 - 223
Target Start/End: Original strand, 41106086 - 41106145
Alignment:
Q  164 tctagtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    |||||| | ||| ||||||||||||| ||||||||| |||||| ||||||||||||||||    
T  41106086 tctagttactataataaacaaaaatctatattttaaattcatttaattaataatgtatat 41106145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Original strand, 4089140 - 4089198
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtata 231  Q
    ||||||||||||||||||||||||||  |||||||| | ||| ||||||||||| ||||    
T  4089140 tattataaacaaaaatcaatattttatattcattcattaaatgatgtatatgttctata 4089198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 173 - 290
Target Start/End: Complemental strand, 21586943 - 21586835
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtatatgttgtatatggtgtttattataaaccacatacatcatttaataaataaa 272  Q
    ||||||||  ||||||||||||||||  |||||||||||||| ||||||||| | |         |||||||| ||||||||||||||| ||||||| ||    
T  21586943 tattataagtaaaaatcaatattttagattcattcaattaatgatgtatatgatct---------ttattatagaccacatacatcattgaataaatgaa 21586853  T
Q  273 tataatatgttgattttt 290  Q
    | ||| || |||||||||    
T  21586852 tctaaaatattgattttt 21586835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 228 - 265
Target Start/End: Complemental strand, 37101778 - 37101741
Alignment:
Q  228 tatatggtgtttattataaaccacatacatcatttaat 265  Q
    |||||||| |||||||||||||||||||||||||||||    
T  37101778 tatatggtctttattataaaccacatacatcatttaat 37101741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Complemental strand, 2943286 - 2943223
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||| || ||||||||||||||||||| ||| ||| ||| |||||||| ||||||||||||||    
T  2943286 tttattgtagaccacatacatcatttaatgaatgaatctaaaatgttgat-ttttgcttataata 2943223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 4089214 - 4089150
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| ||||||||| | || |||||||||||||| ||| ||||||| || |||||||||    
T  4089214 tgtatatggtctttattatagaacatatacatcatttaatgaatgaatataaaatattgattttt 4089150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 25245209 - 25245272
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    |||||| || ||||||||||||||||||| ||| ||| ||| ||||||| |||||||||||||||    
T  25245209 tttattgtagaccacatacatcatttaatgaatgaatctaaaatgttga-tttttgcttataata 25245272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 27242635 - 27242575
Alignment:
Q  222 atgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgt 282  Q
    ||||||||| || | ||||||||||||||||||||||||| ||| ||||||| ||| ||||    
T  27242635 atgttgtatgtgatctttattataaaccacatacatcattcaatgaataaatgtaaaatgt 27242575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 305
Target Start/End: Original strand, 9555315 - 9555393
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    ||||||| || ||||| ||||||||||||||||||||||| ||| ||| ||| ||| | |  ||||||||||||||||||    
T  9555315 tgtatatagtctttatcataaaccacatacatcatttaatgaatgaatctaaaatg-taaagttttgcttataataatga 9555393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 12088900 - 12088822
Alignment:
Q  222 atgttgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| || ||||| ||| |||| | |||||||||||||||| ||| ||| || |||| |||||||||||||||    
T  12088900 atgttgtatatagtctttatcatagaccatacacatcatttaataaattaatctaaaatattga-tttttgcttataata 12088822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 24934684 - 24934633
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgta 220  Q
    ||||| ||||||||||||||| | |||||| ||||||||||| |||||||||    
T  24934684 tcattgttataaacaaaaatccacattttatgttcattcaataaataatgta 24934633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 45985567 - 45985622
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||||| | ||||||||||||||| ||| ||| ||||||| |||||||||    
T  45985567 tcattattataagctaaaatcaatattttaggtttatttaattaatgatgtatatg 45985622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 224
Target Start/End: Original strand, 45989927 - 45989982
Alignment:
Q  169 tcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||||||||||| | ||||||||||||||| ||| ||| ||||||| |||||||||    
T  45989927 tcattattataagctaaaatcaatattttaggtttatttaattaatgatgtatatg 45989982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 301
Target Start/End: Complemental strand, 7701260 - 7701199
Alignment:
Q  239 tattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||||| ||||||||||||||| ||| ||| ||| |||| || |||||||||||||||    
T  7701260 tattataaaccgcatacatcatttaatgaatgaatctaaaatgtaga-tttttgcttataata 7701199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 247 - 308
Target Start/End: Original strand, 10095795 - 10095856
Alignment:
Q  247 accacatacatcatttaataaataaatataatatgttgattttttgcttataataatgaatg 308  Q
    |||| |||||| ||| ||||||||||| ||| |||| | |||||||||||||||| ||||||    
T  10095795 accatatacataattaaataaataaatctaaaatgtagtttttttgcttataatagtgaatg 10095856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 299
Target Start/End: Complemental strand, 30138873 - 30138801
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataa 299  Q
    ||||||| || ||||||||| |||||| |||||||||||| ||| |||  || |||||||| ||||||||||||    
T  30138873 tgtatatagtctttattatagaccacacacatcatttaatgaatgaatccaaaatgttgat-ttttgcttataa 30138801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 224
Target Start/End: Complemental strand, 44819791 - 44819742
Alignment:
Q  175 ttataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    ||||||||||||||| ||||||||| ||||||  || |||||||||||||    
T  44819791 ttataaacaaaaatcgatattttaaattcatttgataaataatgtatatg 44819742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 173 - 218
Target Start/End: Complemental strand, 48440060 - 48440015
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatg 218  Q
    |||||||| ||||||| ||||||||| ||||||||||| |||||||    
T  48440060 tattataagcaaaaattaatattttaggttcattcaataaataatg 48440015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 9930397 - 9930449
Alignment:
Q  171 attattataaacaaaaatcaatattttaagttcattcaattaataatgtatat 223  Q
    ||||||||||||||||||  ||||||||  |||||| ||||||| ||||||||    
T  9930397 attattataaacaaaaatttatattttagattcatttaattaattatgtatat 9930449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 220
Target Start/End: Original strand, 21886473 - 21886525
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgta 220  Q
    ||||||||||||| |||||||  ||||||||  |||||||||||||| |||||    
T  21886473 gtcattattataagcaaaaatttatattttagattcattcaattaatgatgta 21886525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 26477246 - 26477182
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | |||| ||||||||| ||||| |||||||||||||||| ||| || || ||||||    
T  26477246 tgtatatgatctttaatataaaccatatacaccatttaataaataaatctaaaatattaattttt 26477182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 26553686 - 26553622
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||| | |||| ||||||||| ||||| |||||||||||||||| ||| || || ||||||    
T  26553686 tgtatatgatctttaatataaaccatatacaccatttaataaataaatctaaaatattaattttt 26553622  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 29205318 - 29205374
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| |||||||| ||||||||||||||||   |||||| ||||||| |||||||||    
T  29205318 gtcactattataagcaaaaatcaatattttttattcattaaattaatgatgtatatg 29205374  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 31115675 - 31115738
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||| ||||||||||| ||||||| ||| ||  ||| ||||||| |||||||||||||||    
T  31115675 tttattatagaccacatacataatttaatgaatgaagctaaaatgttga-tttttgcttataata 31115738  T

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Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 224
Target Start/End: Original strand, 31813417 - 31813473
Alignment:
Q  168 gtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtatatg 224  Q
    |||| ||||||||||||||||  | ||||||  |||||||||||||| |||||||||    
T  31813417 gtcactattataaacaaaaatttacattttagattcattcaattaatgatgtatatg 31813473  T

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Target: scaffold1137 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold1137
Description:

Target: scaffold1137; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 290
Target Start/End: Complemental strand, 1146 - 1083
Alignment:
Q  227 gtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    ||||| ||| ||||||||| | || |||||||||||||| ||||||||||| ||||||||||||    
T  1146 gtatacggtctttattatatatcatatacatcatttaatgaataaatataaaatgttgattttt 1083  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 226 - 305
Target Start/End: Complemental strand, 89683 - 89605
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatga 305  Q
    |||||||| | ||||||||| | ||||||||||||||||| ||  ||| ||| |||||||| ||||||||||||||||||    
T  89683 tgtatatgatctttattatagatcacatacatcatttaatgaaagaatctaaaatgttgat-ttttgcttataataatga 89605  T

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Target: scaffold0026 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 88983 - 88935
Alignment:
Q  173 tattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    ||||||||||||||||| ||||||||  |||||||||||||| ||||||    
T  88983 tattataaacaaaaatctatattttatattcattcaattaatgatgtat 88935  T

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Target: scaffold0009 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 226 - 290
Target Start/End: Complemental strand, 146053 - 145989
Alignment:
Q  226 tgtatatggtgtttattataaaccacatacatcatttaataaataaatataatatgttgattttt 290  Q
    |||||||||| |||||| || ||||||||||||||||||| ||| ||| ||| ||| ||||||||    
T  146053 tgtatatggtctttattttagaccacatacatcatttaatgaatgaatctaaaatgatgattttt 145989  T

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Target: scaffold0065 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 304
Target Start/End: Original strand, 39175 - 39241
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataataatg 304  Q
    ||||||||| |||| |||||||||||||| ||| ||| ||| || |||| ||||||||||||||||||    
T  39175 tttattatagaccatatacatcatttaatgaatgaatctaaaattttga-tttttgcttataataatg 39241  T

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Target: scaffold0065; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 36995 - 36935
Alignment:
Q  161 tcatctagtcattattataaacaaaaatcaatattttaagttcattcaattaataatgtat 221  Q
    |||||| || ||||||||||||||||||||| ||||||  |||||||| | ||| ||||||    
T  36995 tcatctggttattattataaacaaaaatcaacattttagattcattcattaaatgatgtat 36935  T

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Target: scaffold0149 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 301
Target Start/End: Original strand, 24672 - 24735
Alignment:
Q  237 tttattataaaccacatacatcatttaataaataaatataatatgttgattttttgcttataata 301  Q
    ||||||||| ||||||||||||||||||| ||| ||| ||| || || | |||||||||||||||    
T  24672 tttattatagaccacatacatcatttaatgaatgaatctaaaatatt-aatttttgcttataata 24735  T

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