View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_low_16 (Length: 451)

Name: NF1240_low_16
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_low_16
NF1240_low_16
[»] chr4 (4 HSPs)
chr4 (87-446)||(9050925-9051283)
chr4 (297-355)||(37306472-37306530)
chr4 (297-355)||(43480299-43480357)
chr4 (296-349)||(48129800-48129853)
[»] chr6 (1 HSPs)
chr6 (297-355)||(7447632-7447690)
[»] chr5 (4 HSPs)
chr5 (297-367)||(17190663-17190733)
chr5 (297-367)||(30892164-30892234)
chr5 (287-354)||(42958485-42958552)
chr5 (297-355)||(5990585-5990643)
[»] chr7 (1 HSPs)
chr7 (296-355)||(557443-557502)
[»] chr3 (3 HSPs)
chr3 (289-352)||(46893415-46893478)
chr3 (297-351)||(54186999-54187053)
chr3 (286-355)||(13639448-13639517)
[»] chr8 (2 HSPs)
chr8 (297-355)||(33440570-33440628)
chr8 (296-368)||(33133486-33133558)
[»] chr1 (2 HSPs)
chr1 (297-355)||(932036-932094)
chr1 (316-366)||(12876057-12876107)
[»] chr2 (1 HSPs)
chr2 (297-342)||(864179-864224)
[»] scaffold0150 (1 HSPs)
scaffold0150 (296-332)||(17416-17452)


Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 87 - 446
Target Start/End: Complemental strand, 9051283 - 9050925
Alignment:
Q  87 catattcccctaaatccaacaaattagacatttcatattttaccgaatccaaataagaaatacaaaatacacgtatttatagnnnnnnnnnnaatagaaa 186  Q
    ||||||||||||||||||| |||||||||||||| ||||||||| ||| |||||||||||||||||| |||| |||||||||          ||||||||    
T  9051283 catattcccctaaatccaataaattagacatttcttattttaccaaattcaaataagaaatacaaaagacacatatttatagtttttttc--aatagaaa 9051186  T
Q  187 tgttaatgagtagtagcttgttttgaaccttctttatattatctctttaagagaaatgttatagacaccttcttttt-aacacttattctaatatctaca 285  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||| ||||||| |||||||||| ||| |||||||    
T  9051185 tgttaatgagtagtagcttgttttgaaccttctttatatcatctcttcaagaggaatgttatagacaccgtcttttttaacacttattataacatctaca 9051086  T
Q  286 cttttatttaatgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagacccatataaatttcacgtattgaaatagtgaatg 385  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  9051085 cttttatttaatgaaattcatgtgagtactacattttagaaatggatcccacgtaaattggtgagacccatataaatttcacatattgaaatagtaaatg 9050986  T
Q  386 ttaaaaagtattaaaaagagagtgtttcgaacatttctatccggtcaatccctatgatact 446  Q
    ||||| |||| |||||||| ||||||||||||||||||||| |||||||| ||||| ||||    
T  9050985 ttaaagagtactaaaaagatagtgtttcgaacatttctatctggtcaatctctatgttact 9050925  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 37306530 - 37306472
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    ||||||||||||| |||| |||| || |||||||||| ||| |||| ||||||||||||    
T  37306530 tgaaattcatgtgggtaccacacattggaaatggatctcacataaagtggtgagaccca 37306472  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 43480299 - 43480357
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    ||||||||||||| |||| |||| ||  ||||||||||||| |||| ||||||||||||    
T  43480299 tgaaattcatgtgggtaccacacattgaaaatggatcccacataaagtggtgagaccca 43480357  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 296 - 349
Target Start/End: Original strand, 48129800 - 48129853
Alignment:
Q  296 atgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtga 349  Q
    ||||||||||||||||||  |||||||| ||||||||| || ||||| ||||||    
T  48129800 atgaaattcatgtgagtatcacactttaaaaatggatctcatgtaaaatggtga 48129853  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 7447690 - 7447632
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    ||||||||||||| |||| |||| ||||||||||||||||| |||| ||||||||||||    
T  7447690 tgaaattcatgtgggtaccacacattagaaatggatcccacataaagtggtgagaccca 7447632  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 297 - 367
Target Start/End: Complemental strand, 17190733 - 17190663
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagacccatataaatttcac 367  Q
    ||||||||||| | |||| |||| ||||||||||||||||| |||| |||||||||||| |||| ||||||    
T  17190733 tgaaattcatgcgggtaccacacattagaaatggatcccacataaagtggtgagacccacataagtttcac 17190663  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 297 - 367
Target Start/End: Original strand, 30892164 - 30892234
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagacccatataaatttcac 367  Q
    |||| |||||||| |||| |||| ||||||||||||||||| |||| ||||||||| ||||| | ||||||    
T  30892164 tgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgagactcatatgagtttcac 30892234  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 354
Target Start/End: Original strand, 42958485 - 42958552
Alignment:
Q  287 ttttatttaatgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccc 354  Q
    ||||||||  ||||||||||||| |||| || | || |||||||||||||| |||| |||||||||||    
T  42958485 ttttatttggtgaaattcatgtgggtaccacgcattggaaatggatcccacataaagtggtgagaccc 42958552  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 5990643 - 5990585
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    ||||||||||||| |||| | || || |||||||||||||| |||| ||||||||||||    
T  5990643 tgaaattcatgtgggtaccatacattggaaatggatcccacataaaatggtgagaccca 5990585  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 296 - 355
Target Start/End: Complemental strand, 557502 - 557443
Alignment:
Q  296 atgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    |||||||||||||| |||  |||| ||| ||||||||||||| |||| ||||||||||||    
T  557502 atgaaattcatgtgggtatcacacattaaaaatggatcccacataaagtggtgagaccca 557443  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 352
Target Start/End: Complemental strand, 46893478 - 46893415
Alignment:
Q  289 ttatttaatgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagac 352  Q
    ||||| ||||||||||||||| |||  |||| || |||||||||||||| |||| |||||||||    
T  46893478 ttattaaatgaaattcatgtgggtaacacacattggaaatggatcccacataaagtggtgagac 46893415  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 351
Target Start/End: Complemental strand, 54187053 - 54186999
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgaga 351  Q
    |||| |||||||| |||| |||| ||||||||||||||||| |||| ||||||||    
T  54187053 tgaagttcatgtgggtaccacacattagaaatggatcccacataaaatggtgaga 54186999  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 286 - 355
Target Start/End: Original strand, 13639448 - 13639517
Alignment:
Q  286 cttttatttaatgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    ||||||||  |||||||||||||| |||  |||| || |||||||||| ||| |||| ||||||||||||    
T  13639448 cttttattggatgaaattcatgtgggtatcacacattggaaatggatctcacataaagtggtgagaccca 13639517  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Complemental strand, 33440628 - 33440570
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    ||||| ||||||| |||| |||| || |||||||||||||| |||| ||||||||||||    
T  33440628 tgaaagtcatgtgggtaccacacattggaaatggatcccacataaagtggtgagaccca 33440570  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 368
Target Start/End: Original strand, 33133486 - 33133558
Alignment:
Q  296 atgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagacccatataaatttcacg 368  Q
    ||||||||||||| ||||| ||||||| ||||||| ||| || |||| ||||||| |||| || | |||||||    
T  33133486 atgaaattcatgtaagtaccacactttggaaatgggtccgacataaagtggtgaggcccacatgagtttcacg 33133558  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 297 - 355
Target Start/End: Original strand, 932036 - 932094
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaattggtgagaccca 355  Q
    |||||||||||||  ||| |||| || |||||||||||||| |||| ||||||||||||    
T  932036 tgaaattcatgtggataccacacattggaaatggatcccacataaagtggtgagaccca 932094  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 12876057 - 12876107
Alignment:
Q  316 acactttagaaatggatcccacgtaaattggtgagacccatataaatttca 366  Q
    |||||||||| ||||||||||| |||| |||||||| ||| ||||||||||    
T  12876057 acactttagacatggatcccacataaagtggtgagatccacataaatttca 12876107  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 297 - 342
Target Start/End: Complemental strand, 864224 - 864179
Alignment:
Q  297 tgaaattcatgtgagtactacactttagaaatggatcccacgtaaa 342  Q
    ||||||||||||| |||| |||| ||||||||||||||||| ||||    
T  864224 tgaaattcatgtgggtaccacacattagaaatggatcccacataaa 864179  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 332
Target Start/End: Original strand, 17416 - 17452
Alignment:
Q  296 atgaaattcatgtgagtactacactttagaaatggat 332  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  17416 atgaaatacatgtgagtaccacactttagaaatggat 17452  T

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