View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_19 (Length: 442)
Name: NF1240_low_19
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_19 |
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Alignment Details
Target: chr6 (Bit Score: 136; Significance: 9e-71; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 170 - 430
Target Start/End: Complemental strand, 30431291 - 30431027
Alignment:
| Q |
170 |
taaacatttttatatgatatatctcaactaatgttgaactctcatcacaaaggctacttttcaaagctgataaactaaa-cgacatt-atgataaattg- |
266 |
Q |
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| T |
30431291 |
taaacatttttatatgatatatgtcatctaatgtggaactc--ataacaaaaactacttttcaaagctgataaactaaaacgacatttatgttacattgt |
30431194 |
T |
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| Q |
267 |
gaaattaaaaata----taaataactactttatgtagatatcattgactataatgagtctaattttacatgtttccacgcaatagtacaagaatctcaaa |
362 |
Q |
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| T |
30431193 |
gaaattaaaaataaatataaataacta-tttatgttgatatcattgactaaaatgaatttaattttacatgtttctgcacaatagtacaagaatctcgaa |
30431095 |
T |
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| Q |
363 |
cgagcttggagctggatgtccaaatgctgcttatttagctgttatagtaaccttattcatggcattca |
430 |
Q |
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| T |
30431094 |
cgagcttggcgctggatgtccaaatgctgcttatttagctgttatagtaaccttgttcatggcattca |
30431027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 2 - 161
Target Start/End: Complemental strand, 30431880 - 30431721
Alignment:
| Q |
2 |
tttatttcatattcagatacaacatttattgctttgttatatatgaccaaatttacattttcatccccagtgttaatatatctggtatgttttggatggt |
101 |
Q |
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| T |
30431880 |
tttatttcatattcagatacaacatttattgttttgttatatatgaccaaatttacattttcatcctcagtattaatgtatctggtatgttttggatgat |
30431781 |
T |
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| Q |
102 |
accatttggagtcagtgttgctggaaggttagtcttgcatgctgagctctactaaaatat |
161 |
Q |
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| T |
30431780 |
accatttggggtcagtgttgctggaaggttagtcttgcatgctgagctctattaatatat |
30431721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 305 - 428
Target Start/End: Complemental strand, 30413177 - 30413054
Alignment:
| Q |
305 |
attgactataatgagtctaattttacatgtttccacgcaatagtacaagaatctcaaacgagcttggagctggatgtccaaatgctgcttatttagctgt |
404 |
Q |
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| T |
30413177 |
attgactacaatgagtctcatttgacatgttttcatgtaacagtacaagaatctcaaatgaactaggagctggatgtccaaatgctgcttatttagctgt |
30413078 |
T |
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| Q |
405 |
tatagtaaccttattcatggcatt |
428 |
Q |
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| T |
30413077 |
aatagtaaccttattcatgtcatt |
30413054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 144
Target Start/End: Complemental strand, 30415229 - 30415099
Alignment:
| Q |
14 |
tcagatacaacatttattgctttgttatatatgaccaaatttacattttcatccccagtgttaatatatctggtatgttttggatggtaccatttggagt |
113 |
Q |
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| T |
30415229 |
tcagatacaaccattattgctttattatctgtggctaaatttactttttcatctacagtgttaatatatccggtatgctttggatggtaccgtttggaat |
30415130 |
T |
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| Q |
114 |
cagtgttgctggaaggttagtcttgcatgct |
144 |
Q |
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| T |
30415129 |
tagtgtttctgcaaggttagtagtgcatgct |
30415099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 11 - 144
Target Start/End: Complemental strand, 30380523 - 30380388
Alignment:
| Q |
11 |
tattcagatacaaca-tttattgctttgttatata--tgaccaaatttacattttcatccccagtgttaatatatctggtatgttttggatggtaccatt |
107 |
Q |
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| T |
30380523 |
tattcagatacatcaatttattgctttgttatatacctgacccaagt-actttttcttccatagtattaatatattgggtacattctggatggtgccatt |
30380425 |
T |
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| Q |
108 |
tggagtcagtgttgctggaaggttagtcttgcatgct |
144 |
Q |
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| T |
30380424 |
cggagttagtgttgcaggaaggttagtctttcatgct |
30380388 |
T |
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