View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1240_low_20 (Length: 441)
Name: NF1240_low_20
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_20 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 28 - 428
Target Start/End: Complemental strand, 6551362 - 6550956
Alignment:
| Q |
28 |
cagagaacttgagaaaaggctgctttcgtgccgagaggcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctacatga |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6551362 |
cagagaacttgagaaaaggctgctttcgtgccgagaggcaactatatcatcttctttactatcttcaaagggttttattccttgatcagaatctacatga |
6551263 |
T |
|
| Q |
128 |
cataacaaagtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctatgact------ttatttctgcacaattataa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
6551262 |
cataacaaagtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctatgactatgactttatttctgcacaatcataa |
6551163 |
T |
|
| Q |
222 |
caagaatcttggtcgaacgtttttctgtacaaatattccttacaatacggcccttttccaaatttaagtttaaatttataaaacatggatattgaaattg |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6551162 |
caagaatcttggtcgaacgtttttctgtacaaatattccttacaatacggcccttttccaaatttaagtttaaatttataaaacatggatattgaaattg |
6551063 |
T |
|
| Q |
322 |
agatttagatatgttcaaaataacataaatattatgaaacagaaacaagcgaattaaaacaaacgtgcattatgctaaaaatatatatataacgaaatgc |
421 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6551062 |
agatttagatatgttcaaaataacatatatattatgaaacagaaacaagcgaattaaaacaaacgtgcattatgctaaaaatatatatacaacgaaatgc |
6550963 |
T |
|
| Q |
422 |
aatagaa |
428 |
Q |
| |
|
||||||| |
|
|
| T |
6550962 |
aatagaa |
6550956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 123 - 199
Target Start/End: Original strand, 49061675 - 49061751
Alignment:
| Q |
123 |
catgacataacaaagtcaaagaataattggatgtgtcattttcatcaacaaagtaaggcatcaatgcatgtctatga |
199 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| | |||| | ||||||| || |||||||||||||| ||||| |
|
|
| T |
49061675 |
catggcataacaaagtcaaagaataattggatgtaccgtttttaccaacaaactagagcatcaatgcatgtatatga |
49061751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 341 - 381
Target Start/End: Complemental strand, 1497540 - 1497500
Alignment:
| Q |
341 |
ataacataaatattatgaaacagaaacaagcgaattaaaac |
381 |
Q |
| |
|
|||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
1497540 |
ataacataaatattatgaaattgaaacaagcaaattaaaac |
1497500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University