View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_low_22 (Length: 425)

Name: NF1240_low_22
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_low_22
NF1240_low_22
[»] chr7 (20 HSPs)
chr7 (30-418)||(26717701-26718090)
chr7 (244-289)||(18023705-18023750)
chr7 (244-285)||(32315253-32315294)
chr7 (244-285)||(45046205-45046246)
chr7 (244-292)||(22564132-22564180)
chr7 (256-291)||(4047809-4047844)
chr7 (244-291)||(46371005-46371052)
chr7 (256-324)||(10242479-10242539)
chr7 (245-291)||(26529682-26529728)
chr7 (247-289)||(34448603-34448645)
chr7 (256-289)||(3830094-3830127)
chr7 (248-285)||(5082334-5082371)
chr7 (244-289)||(21751616-21751661)
chr7 (244-289)||(29926398-29926443)
chr7 (244-289)||(33473511-33473556)
chr7 (252-289)||(39280816-39280853)
chr7 (244-289)||(42227795-42227840)
chr7 (244-285)||(47607900-47607941)
chr7 (244-284)||(21327531-21327571)
chr7 (244-284)||(30081904-30081944)
[»] chr6 (18 HSPs)
chr6 (244-289)||(21029356-21029401)
chr6 (244-291)||(29680612-29680659)
chr6 (244-289)||(12323480-12323525)
chr6 (245-289)||(33542798-33542842)
chr6 (244-291)||(9977081-9977128)
chr6 (244-291)||(10018423-10018470)
chr6 (254-289)||(26356081-26356116)
chr6 (244-289)||(788892-788937)
chr6 (256-289)||(8629698-8629731)
chr6 (255-292)||(12459742-12459779)
chr6 (244-289)||(15169957-15170002)
chr6 (244-289)||(15178729-15178774)
chr6 (256-289)||(18253341-18253374)
chr6 (244-289)||(24623307-24623352)
chr6 (244-289)||(29283841-29283886)
chr6 (256-288)||(866287-866319)
chr6 (245-289)||(23903298-23903342)
chr6 (245-289)||(32053814-32053858)
[»] chr2 (29 HSPs)
chr2 (244-289)||(24579658-24579703)
chr2 (244-289)||(38904087-38904132)
chr2 (244-329)||(31815877-31815955)
chr2 (247-289)||(33866914-33866956)
chr2 (256-289)||(11560524-11560557)
chr2 (244-289)||(20990894-20990939)
chr2 (244-289)||(23250310-23250355)
chr2 (245-289)||(660813-660857)
chr2 (244-284)||(18290683-18290723)
chr2 (244-288)||(37852037-37852081)
chr2 (256-291)||(5168581-5168616)
chr2 (254-289)||(9384761-9384796)
chr2 (254-289)||(32458328-32458363)
chr2 (244-291)||(36264469-36264516)
chr2 (244-325)||(43067663-43067737)
chr2 (247-292)||(346117-346162)
chr2 (244-289)||(4238785-4238830)
chr2 (244-289)||(4897569-4897614)
chr2 (244-289)||(4944963-4945008)
chr2 (244-289)||(9547399-9547444)
chr2 (256-289)||(20200731-20200764)
chr2 (244-289)||(23407008-23407053)
chr2 (244-289)||(24581007-24581052)
chr2 (244-289)||(25395432-25395477)
chr2 (244-289)||(29896284-29896329)
chr2 (244-292)||(16408697-16408745)
chr2 (249-289)||(19159967-19160007)
chr2 (257-289)||(20120724-20120756)
chr2 (247-291)||(29599963-29600007)
[»] chr1 (22 HSPs)
chr1 (244-289)||(1091205-1091250)
chr1 (244-289)||(27533269-27533314)
chr1 (260-291)||(35473976-35474007)
chr1 (246-289)||(51241516-51241559)
chr1 (251-289)||(27449442-27449480)
chr1 (296-329)||(3560422-3560455)
chr1 (256-289)||(5907825-5907858)
chr1 (244-289)||(16966962-16967007)
chr1 (244-289)||(16967184-16967229)
chr1 (244-289)||(17669671-17669716)
chr1 (244-285)||(18398228-18398269)
chr1 (244-289)||(26010248-26010293)
chr1 (244-289)||(32962589-32962634)
chr1 (244-289)||(40734995-40735040)
chr1 (254-291)||(45418063-45418100)
chr1 (244-289)||(48681923-48681968)
chr1 (256-292)||(13778584-13778620)
chr1 (244-292)||(31338042-31338090)
chr1 (257-289)||(35011419-35011451)
chr1 (247-291)||(41769808-41769852)
chr1 (257-289)||(44678020-44678052)
chr1 (255-287)||(48898493-48898525)
[»] chr5 (26 HSPs)
chr5 (245-289)||(27903139-27903183)
chr5 (245-289)||(39963519-39963563)
chr5 (244-291)||(37021362-37021409)
chr5 (244-289)||(20125052-20125096)
chr5 (244-289)||(35493963-35494008)
chr5 (247-291)||(2839822-2839866)
chr5 (245-289)||(12670065-12670109)
chr5 (258-289)||(16076457-16076488)
chr5 (257-291)||(22499126-22499160)
chr5 (257-291)||(27679522-27679556)
chr5 (260-289)||(13409454-13409483)
chr5 (244-289)||(15889437-15889482)
chr5 (244-289)||(16579364-16579409)
chr5 (244-289)||(20688066-20688111)
chr5 (244-289)||(26913103-26913148)
chr5 (244-289)||(37054259-37054304)
chr5 (244-289)||(40959028-40959073)
chr5 (260-289)||(43108595-43108624)
chr5 (260-292)||(1476116-1476148)
chr5 (296-328)||(6414065-6414097)
chr5 (245-285)||(16036857-16036897)
chr5 (257-289)||(17862005-17862037)
chr5 (244-284)||(18999980-19000020)
chr5 (244-284)||(25988812-25988852)
chr5 (245-289)||(33928665-33928709)
chr5 (247-291)||(34987144-34987188)
[»] chr4 (30 HSPs)
chr4 (244-284)||(34969383-34969423)
chr4 (245-289)||(41520980-41521024)
chr4 (247-289)||(13497248-13497290)
chr4 (244-289)||(19997354-19997399)
chr4 (244-292)||(27550723-27550772)
chr4 (256-289)||(30850386-30850419)
chr4 (244-288)||(18094432-18094476)
chr4 (245-289)||(55421560-55421604)
chr4 (256-286)||(23809978-23810008)
chr4 (244-289)||(2932149-2932194)
chr4 (256-289)||(10148205-10148238)
chr4 (244-289)||(11085755-11085800)
chr4 (244-289)||(11949753-11949798)
chr4 (244-289)||(21318243-21318288)
chr4 (256-289)||(22040676-22040709)
chr4 (244-289)||(22411790-22411835)
chr4 (256-289)||(25115075-25115108)
chr4 (256-289)||(28435250-28435283)
chr4 (256-289)||(34042266-34042299)
chr4 (256-289)||(39171372-39171405)
chr4 (244-289)||(42845051-42845096)
chr4 (256-289)||(50362141-50362174)
chr4 (244-289)||(54500595-54500640)
chr4 (256-288)||(4360646-4360678)
chr4 (244-292)||(18903748-18903796)
chr4 (245-289)||(19479468-19479512)
chr4 (245-289)||(32268107-32268151)
chr4 (256-292)||(36521496-36521532)
chr4 (245-289)||(44528672-44528716)
chr4 (256-288)||(50152240-50152272)
[»] chr8 (18 HSPs)
chr8 (244-289)||(14279561-14279606)
chr8 (244-289)||(33996095-33996140)
chr8 (244-289)||(37141383-37141428)
chr8 (244-293)||(39138988-39139037)
chr8 (244-284)||(12061618-12061658)
chr8 (244-325)||(8999881-8999956)
chr8 (255-289)||(32285762-32285796)
chr8 (296-329)||(1342719-1342752)
chr8 (256-289)||(8717477-8717510)
chr8 (256-289)||(8881301-8881334)
chr8 (244-289)||(29908037-29908082)
chr8 (244-289)||(30694429-30694474)
chr8 (244-289)||(35700385-35700430)
chr8 (257-289)||(12714373-12714405)
chr8 (245-289)||(23159467-23159511)
chr8 (245-289)||(26196595-26196639)
chr8 (245-289)||(27718885-27718929)
chr8 (296-328)||(38344046-38344078)
[»] chr3 (25 HSPs)
chr3 (244-289)||(45727515-45727560)
chr3 (244-289)||(48022304-48022349)
chr3 (255-291)||(21567688-21567724)
chr3 (257-292)||(47099038-47099073)
chr3 (247-289)||(37243250-37243292)
chr3 (256-290)||(38602983-38603017)
chr3 (256-289)||(759596-759629)
chr3 (247-292)||(4332660-4332705)
chr3 (256-289)||(7202918-7202951)
chr3 (256-289)||(10594703-10594736)
chr3 (250-291)||(16663232-16663273)
chr3 (256-289)||(16792976-16793009)
chr3 (244-289)||(28430555-28430600)
chr3 (256-289)||(30554877-30554910)
chr3 (256-289)||(39779050-39779083)
chr3 (244-289)||(45334215-45334260)
chr3 (244-289)||(45431974-45432019)
chr3 (244-289)||(48944346-48944390)
chr3 (244-289)||(54018396-54018441)
chr3 (244-288)||(8136622-8136666)
chr3 (257-289)||(10926495-10926527)
chr3 (257-289)||(16980357-16980389)
chr3 (244-292)||(31214657-31214705)
chr3 (244-284)||(33930370-33930410)
chr3 (245-289)||(34899123-34899167)
[»] scaffold0028 (1 HSPs)
scaffold0028 (254-289)||(72775-72810)
[»] scaffold0021 (1 HSPs)
scaffold0021 (244-289)||(161167-161212)


Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 30 - 418
Target Start/End: Original strand, 26717701 - 26718090
Alignment:
Q  30 tcctgaacgatgtatcctaacataattggttttcaatggtggaaggaagataaaaacaagtttctttgtttttagaggtgtaaaacaatggctttaattg 129  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26717701 tcctgaacgatgtatcctaacataattggttttcaatggtggaaggaagataaaaacaagtttctttgtttttagaggtgtaaaacaatggctttaattg 26717800  T
Q  130 cttagctcttgtcttggaacac--aataaaaactcgtaagtttgaacttttaccaatccaagtgataaaaaatgcaattttttctcttcttaagacttga 227  Q
    | ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  26717801 cgtagctcttgtcttggaacacaaaataaaaactcgtaagtttgaacttttaccaatccaagtgataaaaaatgcaattttttctcttgttaagacttga 26717900  T
Q  228 aaggtttta-nnnnnnngtggtggtcagagtttgaaccctgaaccttgcatatattatgcattattagttatcactaccaactgagttaagctcacgaga 326  Q
    |||||||||        |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  26717901 aaggttttattttttttgtggtggtcagagtttgaaccctggaccttgcatatattatgcattattagttatcactaccaactgagttaaactcacgaga 26718000  T
Q  327 atacttgaaatgttttattaattccagatggatagttttggactagaaaatgttttaagaataataactctatcgtagtagtcttcatctca 418  Q
    | |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||  |||||||||||||||||||||||    
T  26718001 acacttgaaatgttttattaattccagatggatagtttcggactagaaaacgttttaagaataataa--ctatcgtagtagtcttcatctca 26718090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 18023750 - 18023705
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||    
T  18023750 gtggtggtcggagtttgaaccctggaccttgcatatattatgcatt 18023705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 285
Target Start/End: Complemental strand, 32315294 - 32315253
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatg 285  Q
    ||||||||||| ||| ||||||||||||||||||||||||||    
T  32315294 gtggtggtcagggttcgaaccctgaaccttgcatatattatg 32315253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 45046205 - 45046246
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatg 285  Q
    |||||||||||||||||||||| | |||||||||||||||||    
T  45046205 gtggtggtcagagtttgaaccccggaccttgcatatattatg 45046246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 22564132 - 22564180
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    ||||||||||||||||||||| ||||| |||||||||||| | ||||||    
T  22564132 gtggtggtcagagtttgaaccttgaactttgcatatattacgtattatt 22564180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 4047844 - 4047809
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcattat 291  Q
    |||| |||||||||||||||||||||||||||||||    
T  4047844 gtttaaaccctgaaccttgcatatattatgcattat 4047809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 46371052 - 46371005
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||| |||||||||||| | |||||| ||||||||||||||||    
T  46371052 gtggtggtcggagtttgaaccccggaccttggatatattatgcattat 46371005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 324
Target Start/End: Complemental strand, 10242539 - 10242479
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcattattagttatcactaccaactgagttaagctcacga 324  Q
    |||||||||||| ||||||||||||||||||||      ||||  ||||||||||||||||||||||||    
T  10242539 gtttgaaccctggaccttgcatatattatgcat------ttat--ctaccaactgagttaagctcacga 10242479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 26529682 - 26529728
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    |||||||| | |||| ||||| |||||||||||||||||||||||||    
T  26529682 tggtggtcggggtttaaaccccgaaccttgcatatattatgcattat 26529728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 34448603 - 34448645
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| |||||||||||| ||||| |||||||||||||||    
T  34448603 gtggtcagggtttgaaccctggaccttacatatattatgcatt 34448645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 3830127 - 3830094
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  3830127 gtttgaaccctggaccttgcatatattatgcatt 3830094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 285
Target Start/End: Complemental strand, 5082371 - 5082334
Alignment:
Q  248 tggtcagagtttgaaccctgaaccttgcatatattatg 285  Q
    |||||||||||||||| | |||||||||||||||||||    
T  5082371 tggtcagagtttgaactcagaaccttgcatatattatg 5082334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 21751616 - 21751661
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||| ||  || |||||||||||||||||||    
T  21751616 gtggtggtcagagtttgaaacccaaatcttgcatatattatgcatt 21751661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 29926398 - 29926443
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| |||||||||||||||| || |||||||||| |||||||    
T  29926398 gtggtggccagagtttgaaccctggacattgcatatatcatgcatt 29926443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 33473511 - 33473556
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| ||| ||| |||||||| |||||||||||||||||||||    
T  33473511 gtggtggccagggttggaaccctggaccttgcatatattatgcatt 33473556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 289
Target Start/End: Original strand, 39280816 - 39280853
Alignment:
Q  252 cagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||| | |||||||||||||||||||||    
T  39280816 cagagtttgaaccccggaccttgcatatattatgcatt 39280853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 42227795 - 42227840
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||  ||||||| |||||||||||||||    
T  42227795 gtggtggtcggagtttgaacctcgaaccttacatatattatgcatt 42227840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 47607900 - 47607941
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatg 285  Q
    ||||||| | |||||||||||||| |||||||||||||||||    
T  47607900 gtggtggccggagtttgaaccctggaccttgcatatattatg 47607941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 21327531 - 21327571
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    ||||||||| ||||||||||||  |||||||||||||||||    
T  21327531 gtggtggtcggagtttgaaccccaaaccttgcatatattat 21327571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 30081944 - 30081904
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    |||||||||||  ||||||||||||||||| ||||||||||    
T  30081944 gtggtggtcaggatttgaaccctgaaccttacatatattat 30081904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 21029356 - 21029401
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||    
T  21029356 gtggtggtcagaatttgaaccccgaaccttgcatatattatgcatt 21029401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 29680659 - 29680612
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||| |||||||||| | |||||||||||||||||||||||||    
T  29680659 gtggtggtcggagtttgaacaccgaaccttgcatatattatgcattat 29680612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 12323480 - 12323525
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | ||||||||||||||||||| ||||||||||||||    
T  12323480 gtggtggtcggtgtttgaaccctgaaccttgtatatattatgcatt 12323525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 33542798 - 33542842
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| ||||||||||  ||||||||||||||||||||||||    
T  33542798 tggtggtcggagtttgaactatgaaccttgcatatattatgcatt 33542842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 9977128 - 9977081
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||||    
T  9977128 gtggtggtcagggtttgaaccccagaccttgcatatattatgcattat 9977081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Complemental strand, 10018470 - 10018423
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||| | |||||||||||| ||||||| |||||||||||||||||    
T  10018470 gtggtggccggagtttgaaccccgaaccttacatatattatgcattat 10018423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 26356081 - 26356116
Alignment:
Q  254 gagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||||    
T  26356081 gagtttgaaccccgaaccttgcatatattatgcatt 26356116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 788937 - 788892
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||| | |||||||||||||||||||||||    
T  788937 gtggtggtcggggtttgaactccgaaccttgcatatattatgcatt 788892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 8629698 - 8629731
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||| |||||||||||||||||||||||    
T  8629698 gtttgaaccccgaaccttgcatatattatgcatt 8629731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 12459742 - 12459779
Alignment:
Q  255 agtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    ||||||||||| ||||||| ||||||||||||||||||    
T  12459742 agtttgaaccccgaaccttacatatattatgcattatt 12459779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 15170002 - 15169957
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||||    
T  15170002 gtggtggtcggggtttgaaccccgaaccttacatatattatgcatt 15169957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 15178774 - 15178729
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||||    
T  15178774 gtggtggtcggggtttgaaccccgaaccttacatatattatgcatt 15178729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 18253341 - 18253374
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  18253341 gtttgaaccctggaccttgcatatattatgcatt 18253374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 24623307 - 24623352
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||||    
T  24623307 gtggtggtcggggtttgaaccccgaaccttacatatattatgcatt 24623352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 29283886 - 29283841
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||||  |||||||||||||||| ||||    
T  29283886 gtggtggtcggagtttgaaccctagaccttgcatatattatacatt 29283841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 866287 - 866319
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcat 288  Q
    ||||||||| |||||||||||||||||||||||    
T  866287 gtttgaaccatgaaccttgcatatattatgcat 866319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 23903298 - 23903342
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| | |||||||||| |||| ||||||||||||||||||    
T  23903298 tggtggtcggtgtttgaaccccgaacgttgcatatattatgcatt 23903342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 32053858 - 32053814
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||| | |||||||||||  |||||||||||||||||||||||    
T  32053858 tggtggccggagtttgaaccacgaaccttgcatatattatgcatt 32053814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 24579658 - 24579703
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||    
T  24579658 gtggtggccagagtttgaaccctggaccttgcatatattatgcatt 24579703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 38904132 - 38904087
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| || ||||||||||||||||||||||||||||||||||    
T  38904132 gtggtggttagggtttgaaccctgaaccttgcatatattatgcatt 38904087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 329
Target Start/End: Original strand, 31815877 - 31815955
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattattagttatcactaccaactgagttaagctcacgagaata 329  Q
    ||||||||| | |||||||||| | |||||||||||||||||||       || || |||||||||||||||||||||||||||||    
T  31815877 gtggtggtcggggtttgaaccccggaccttgcatatattatgca-------ttgtccctaccaactgagttaagctcacgagaata 31815955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 33866956 - 33866914
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||| ||||||||||||||| |||||||||    
T  33866956 gtggtcagagtttgaactctgaaccttgcatattttatgcatt 33866914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 11560557 - 11560524
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||||||||||||||||    
T  11560557 gtttgaaccctgaaccttgcatatattatgcatt 11560524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 20990894 - 20990939
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||||||||||||||||| |||||||||    
T  20990894 gtggtggtcggggtttgaaccctgaaccttgcatattttatgcatt 20990939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 23250310 - 23250355
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||||| |||||||||||||||||||||    
T  23250310 gtggtggtcggggtttgaaccctggaccttgcatatattatgcatt 23250355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 660813 - 660857
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| | |||||||||||| |||||||||||||||||||||    
T  660813 tggtggtcggggtttgaaccctggaccttgcatatattatgcatt 660857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 18290723 - 18290683
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    ||||||||| |||||||||||| ||||||||||||||||||    
T  18290723 gtggtggtcggagtttgaaccccgaaccttgcatatattat 18290683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 37852081 - 37852037
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcat 288  Q
    |||||||| || |||||||||||| ||||||||||||||||||||    
T  37852081 gtggtggttagggtttgaaccctggaccttgcatatattatgcat 37852037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 291
Target Start/End: Original strand, 5168581 - 5168616
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcattat 291  Q
    |||||||||| |||||||||||||||||||||||||    
T  5168581 gtttgaaccccgaaccttgcatatattatgcattat 5168616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 9384796 - 9384761
Alignment:
Q  254 gagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||||||||| |||||||||||||||    
T  9384796 gagtttgaaccctgaaccttacatatattatgcatt 9384761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 32458363 - 32458328
Alignment:
Q  254 gagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||| |||||||||||||||||||||    
T  32458363 gagtttgaaccctggaccttgcatatattatgcatt 32458328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 36264469 - 36264516
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||| | |||||||||| |||| ||||||||||||||||||||    
T  36264469 gtggtggtcggggtttgaaccccgaactttgcatatattatgcattat 36264516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 244 - 325
Target Start/End: Complemental strand, 43067737 - 43067663
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattattagttatcactaccaactgagttaagctcacgag 325  Q
    ||||||||||| |||||||||| |||| |||||||| |||| |||||||        |||||||||||||||||||||||||    
T  43067737 gtggtggtcagggtttgaaccccgaacattgcatatgttattcattatt-------cctaccaactgagttaagctcacgag 43067663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 346117 - 346162
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    |||||| | |||||||||||| ||||| ||||||||||||||||||    
T  346117 gtggtcggggtttgaaccctggaccttacatatattatgcattatt 346162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 4238830 - 4238785
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| ||||| |||||| ||||||| |||||||||||||||    
T  4238830 gtggtggtcggagttcgaaccccgaaccttacatatattatgcatt 4238785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 4897614 - 4897569
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| ||| ||||||||| | ||||||||||||||||||||||    
T  4897614 gtggtggccagggtttgaaccataaaccttgcatatattatgcatt 4897569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 4945008 - 4944963
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| ||| ||||||||| | ||||||||||||||||||||||    
T  4945008 gtggtggccagggtttgaaccataaaccttgcatatattatgcatt 4944963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 9547399 - 9547444
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | ||||||||||  ||||||||||||||||||||||    
T  9547399 gtggtggtcggggtttgaaccccaaaccttgcatatattatgcatt 9547444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 20200764 - 20200731
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  20200764 gtttgaaccctggaccttgcatatattatgcatt 20200731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 23407008 - 23407053
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||| ||||||||||   |||||||||||||||||||||    
T  23407008 gtggtggtcagggtttgaaccccagaccttgcatatattatgcatt 23407053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 24581007 - 24581052
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||  |||||||||||||||||||||||    
T  24581007 gtggtggtcggggtttgaacctcgaaccttgcatatattatgcatt 24581052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 25395432 - 25395477
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |  |||||||| ||||||||||||||||||||||||    
T  25395432 gtggtggtcgggatttgaaccttgaaccttgcatatattatgcatt 25395477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 29896284 - 29896329
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | ||||||||||  ||||||||||||||||||||||    
T  29896284 gtggtggtcggggtttgaaccccaaaccttgcatatattatgcatt 29896329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 16408697 - 16408745
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    ||||||||||||||||||||||| ||| || ||| |||||| |||||||    
T  16408697 gtggtggtcagagtttgaaccctaaactttacatgtattatacattatt 16408745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 289
Target Start/End: Complemental strand, 19160007 - 19159967
Alignment:
Q  249 ggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||| |||||||||| | |||||||||||||||||||||||    
T  19160007 ggtcggagtttgaactccgaaccttgcatatattatgcatt 19159967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 20120724 - 20120756
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||||||||||||||    
T  20120724 tttgaaccccgaaccttgcatatattatgcatt 20120756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 29600007 - 29599963
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    |||||| |||||||||||| | |||||| ||||||||||||||||    
T  29600007 gtggtcggagtttgaaccccggaccttggatatattatgcattat 29599963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 1091250 - 1091205
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||||||||||| |||||||||||| ||||||||||    
T  1091250 gtggtggtcagagtttgaaccccgaaccttgcatacattatgcatt 1091205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 27533314 - 27533269
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||| |||||||||||||||||||||||    
T  27533314 gtggtggtcggggtttgaaccccgaaccttgcatatattatgcatt 27533269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 291
Target Start/End: Complemental strand, 35474007 - 35473976
Alignment:
Q  260 gaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||||||||||||||||||||||||||    
T  35474007 gaaccctgaaccttgcatatattatgcattat 35473976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 246 - 289
Target Start/End: Complemental strand, 51241559 - 51241516
Alignment:
Q  246 ggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| |||| | |||||||||||||||||||||||||||||    
T  51241559 ggtggtcggagtctaaaccctgaaccttgcatatattatgcatt 51241516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 251 - 289
Target Start/End: Original strand, 27449442 - 27449480
Alignment:
Q  251 tcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||| |||||||||||||| |||||||||||||||||||    
T  27449442 tcagggtttgaaccctgaatcttgcatatattatgcatt 27449480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Original strand, 3560422 - 3560455
Alignment:
Q  296 tatcactaccaactgagttaagctcacgagaata 329  Q
    |||| |||||||||||||||||||||||||||||    
T  3560422 tatccctaccaactgagttaagctcacgagaata 3560455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 5907858 - 5907825
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  5907858 gtttgaaccctggaccttgcatatattatgcatt 5907825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 16966962 - 16967007
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| | |||||||||||  |||||||||||||||||||||||    
T  16966962 gtggtggccggagtttgaacctcgaaccttgcatatattatgcatt 16967007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 16967184 - 16967229
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| | |||||||||||  |||||||||||||||||||||||    
T  16967184 gtggtggccggagtttgaacctcgaaccttgcatatattatgcatt 16967229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 17669716 - 17669671
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| | |||||||||||| |||||||||||||||||| ||||    
T  17669716 gtggtggccggagtttgaaccccgaaccttgcatatattatacatt 17669671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 285
Target Start/End: Original strand, 18398228 - 18398269
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatg 285  Q
    ||||||||||||| || || ||||||||||||||||||||||    
T  18398228 gtggtggtcagagattaaatcctgaaccttgcatatattatg 18398269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 26010293 - 26010248
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||| |||||||||| ||||||||||| |||||| ||||    
T  26010293 gtggtggtcagggtttgaaccccgaaccttgcatgtattatacatt 26010248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 32962634 - 32962589
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||||| ||||||||||| |||||||||    
T  32962634 gtggtggtcggggtttgaaccctggaccttgcatattttatgcatt 32962589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 40734995 - 40735040
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||| |||||||||| ||||||| ||||| |||||||||    
T  40734995 gtggtggtcagggtttgaaccccgaaccttacatattttatgcatt 40735040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 45418063 - 45418100
Alignment:
Q  254 gagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  45418063 gagttcgaatcctgaaccttgcatatattatgcattat 45418100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48681923 - 48681968
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||| | | |||||||||||||||||||||||    
T  48681923 gtggtggtcggagtttgagctccgaaccttgcatatattatgcatt 48681968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 13778620 - 13778584
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  13778620 gtttgaaccccgaaccttgcatattttatgcattatt 13778584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 31338090 - 31338042
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    ||||||||| ||||||||| || | |||||| |||||||||||||||||    
T  31338090 gtggtggtcggagtttgaatcccgcaccttgtatatattatgcattatt 31338042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 35011451 - 35011419
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| ||||||||||||||||||||||||    
T  35011451 tttgaaccttgaaccttgcatatattatgcatt 35011419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 41769808 - 41769852
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    |||||| |||||||||||| | |||||| ||||||||||||||||    
T  41769808 gtggtcggagtttgaaccccggaccttggatatattatgcattat 41769852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 44678020 - 44678052
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||||||||||||||    
T  44678020 tttgaaccccgaaccttgcatatattatgcatt 44678052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 48898493 - 48898525
Alignment:
Q  255 agtttgaaccctgaaccttgcatatattatgca 287  Q
    ||||||||||| |||||||||||||||||||||    
T  48898493 agtttgaaccccgaaccttgcatatattatgca 48898525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 27903183 - 27903139
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| |||||||||||| |||||||||||||||||||||||    
T  27903183 tggtggtcggagtttgaaccccgaaccttgcatatattatgcatt 27903139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 39963563 - 39963519
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||| ||||||| |||||||||||||||    
T  39963563 tggtggtcagagtttgaaccccgaaccttacatatattatgcatt 39963519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 244 - 291
Target Start/End: Original strand, 37021362 - 37021409
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||| | |||||||||||||| |||||||||||||||||||||    
T  37021362 gtggtggtcggggtttgaaccctgaatcttgcatatattatgcattat 37021409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 20125096 - 20125052
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||    
T  20125096 gtggtggtcggagtttgaaccc-gaaccttgcatatattatgcatt 20125052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 35493963 - 35494008
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| ||||||||| || |||||||||||||||||||||||    
T  35493963 gtggtggtcggagtttgaatcccgaaccttgcatatattatgcatt 35494008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 247 - 291
Target Start/End: Complemental strand, 2839866 - 2839822
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    |||||| |||||||||||| |||||||| ||||||||||||||||    
T  2839866 gtggtcggagtttgaaccccgaaccttggatatattatgcattat 2839822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 12670065 - 12670109
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||  |||||||||| |||||||||||||||||||||||    
T  12670065 tggtggtcaaggtttgaaccccgaaccttgcatatattatgcatt 12670109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 258 - 289
Target Start/End: Complemental strand, 16076488 - 16076457
Alignment:
Q  258 ttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||||||||||||||    
T  16076488 ttgaaccctgaaccttgcatatattatgcatt 16076457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Original strand, 22499126 - 22499160
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||||||||||||||||||||| |||||||    
T  22499126 tttgaaccctgaaccttgcatatattaagcattat 22499160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 27679556 - 27679522
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||| |||||||||||||||||||||||||    
T  27679556 tttgaaccccgaaccttgcatatattatgcattat 27679522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 289
Target Start/End: Complemental strand, 13409483 - 13409454
Alignment:
Q  260 gaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||||||||||||    
T  13409483 gaaccctgaaccttgcatatattatgcatt 13409454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 15889482 - 15889437
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||||  |||||||||||||||||||||    
T  15889482 gtggtggtcggggtttgaaccctagaccttgcatatattatgcatt 15889437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 16579364 - 16579409
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||| |||||||||  | |||||||||||||||||||||    
T  16579364 gtggtggtcagggtttgaaccacggaccttgcatatattatgcatt 16579409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 20688111 - 20688066
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| |||||||||||| | | |||||||||||||||||||||    
T  20688111 gtggtggccagagtttgaactccggaccttgcatatattatgcatt 20688066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 26913103 - 26913148
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| | ||||||||||| ||||| ||||||||||||||||||    
T  26913103 gtggtggccggagtttgaaccttgaacgttgcatatattatgcatt 26913148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 37054259 - 37054304
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||| |||||||  ||||||||||||||    
T  37054259 gtggtggtcggagtttgaaccccgaaccttatatatattatgcatt 37054304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 40959073 - 40959028
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | || ||||||||||| |||||||||||||||||||    
T  40959073 gtggtggtcggggtctgaaccctgaatcttgcatatattatgcatt 40959028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 289
Target Start/End: Complemental strand, 43108624 - 43108595
Alignment:
Q  260 gaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||||||||||||    
T  43108624 gaaccctgaaccttgcatatattatgcatt 43108595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 260 - 292
Target Start/End: Original strand, 1476116 - 1476148
Alignment:
Q  260 gaaccctgaaccttgcatatattatgcattatt 292  Q
    |||||||||||||||||||||||||| ||||||    
T  1476116 gaaccctgaaccttgcatatattatgaattatt 1476148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 6414097 - 6414065
Alignment:
Q  296 tatcactaccaactgagttaagctcacgagaat 328  Q
    |||| ||||||||||||||||||||||||||||    
T  6414097 tatccctaccaactgagttaagctcacgagaat 6414065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 16036897 - 16036857
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatg 285  Q
    |||||| ||||||||||||| || |||||||||||||||||    
T  16036897 tggtggccagagtttgaaccatggaccttgcatatattatg 16036857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 17862037 - 17862005
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||| ||||||||||||||||||    
T  17862037 tttgaaccctgaactttgcatatattatgcatt 17862005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 19000020 - 18999980
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    ||||||||||||||||||||||  |||||| ||||||||||    
T  19000020 gtggtggtcagagtttgaaccccaaaccttacatatattat 18999980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 25988812 - 25988852
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    ||||||||| ||||||||| |||| ||||||||||||||||    
T  25988812 gtggtggtcggagtttgaatcctggaccttgcatatattat 25988852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 33928709 - 33928665
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||| |||||||| ||||| | |||||||||||||||||||||    
T  33928709 tggtggccagagtttaaaccccggaccttgcatatattatgcatt 33928665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 247 - 291
Target Start/End: Original strand, 34987144 - 34987188
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    |||||| || ||||||||| |||||||| ||||||||||||||||    
T  34987144 gtggtcggaatttgaaccccgaaccttggatatattatgcattat 34987188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 244 - 284
Target Start/End: Original strand, 34969383 - 34969423
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  34969383 gtggtggtcggagtttgaaccctgaaccttgcatatattat 34969423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 41521024 - 41520980
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| ||||||||||| ||||||||||||||||||||||||    
T  41521024 tggtggtcggagtttgaaccttgaaccttgcatatattatgcatt 41520980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 247 - 289
Target Start/End: Original strand, 13497248 - 13497290
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||||||||||||||| |||| ||||    
T  13497248 gtggtcagagtttgaaccctgaaccttgcatattttattcatt 13497290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 19997354 - 19997399
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||    
T  19997354 gtggtggtcggagtttgaaccccgaactttgcatatattatgcatt 19997399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 27550723 - 27550772
Alignment:
Q  244 gtggtggtcagagtttgaac-cctgaaccttgcatatattatgcattatt 292  Q
    ||||||| |||||||||||| |||| ||||||||||||||||||||||||    
T  27550723 gtggtggccagagtttgaacacctggaccttgcatatattatgcattatt 27550772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 30850386 - 30850419
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||||||||||||||||    
T  30850386 gtttgaaccctgaaccttgcatatattatgcatt 30850419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 288
Target Start/End: Complemental strand, 18094476 - 18094432
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcat 288  Q
    |||||||| || |||||||||||| ||||||||||||||||||||    
T  18094476 gtggtggttagggtttgaaccctggaccttgcatatattatgcat 18094432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 55421560 - 55421604
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||  | |||||||||||||||||||||||||||||||    
T  55421560 tggtggtcaggatctgaaccctgaaccttgcatatattatgcatt 55421604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 286
Target Start/End: Complemental strand, 23810008 - 23809978
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgc 286  Q
    |||||||||||||||||||||||||||||||    
T  23810008 gtttgaaccctgaaccttgcatatattatgc 23809978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 2932194 - 2932149
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||| |||||||| ||| |||||||||||||||    
T  2932194 gtggtggtcagaatttgtaccctgaatcttacatatattatgcatt 2932149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 10148238 - 10148205
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| |||||||||||||||||||||||||    
T  10148238 gtttgaactctgaaccttgcatatattatgcatt 10148205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 11085755 - 11085800
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| ||||||||| |  |||||||||||||||||||||||    
T  11085755 gtggtggtcggagtttgaatctcgaaccttgcatatattatgcatt 11085800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 11949753 - 11949798
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||| | |||||||||||||||||||||    
T  11949753 gtggtggtcggggtttgaaccccggaccttgcatatattatgcatt 11949798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 21318243 - 21318288
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||||  |||||||||||||||||||||    
T  21318243 gtggtggtcggggtttgaaccctagaccttgcatatattatgcatt 21318288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 22040709 - 22040676
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||| |||||||||||||||||||||||    
T  22040709 gtttgaaccccgaaccttgcatatattatgcatt 22040676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 22411835 - 22411790
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||  ||||||||||||| ||||||| |||||||||||||||    
T  22411835 gtggtggctagagtttgaaccccgaaccttacatatattatgcatt 22411790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 25115108 - 25115075
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||||||||||||| |||||||||    
T  25115108 gtttgaaccctgaaccttgcatatgttatgcatt 25115075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 28435250 - 28435283
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||| |||||||||||||||||||||||    
T  28435250 gtttgaaccccgaaccttgcatatattatgcatt 28435283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 34042299 - 34042266
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||| |||||||||||||||||||||||    
T  34042299 gtttgaaccccgaaccttgcatatattatgcatt 34042266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 39171372 - 39171405
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||||||||||||| |||||||||    
T  39171372 gtttgaaccctgaaccttgcatattttatgcatt 39171405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 42845096 - 42845051
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||| ||||| | |||||||||||||||||||||    
T  42845096 gtggtggtcggagttttaaccccggaccttgcatatattatgcatt 42845051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 50362141 - 50362174
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  50362141 gtttgaaccctggaccttgcatatattatgcatt 50362174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 54500640 - 54500595
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||| |||||||||| | ||||| |||||||||||||||    
T  54500640 gtggtggtcagtgtttgaaccccggaccttacatatattatgcatt 54500595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 4360646 - 4360678
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcat 288  Q
    |||||||||||| ||||||||||||||||||||    
T  4360646 gtttgaaccctgcaccttgcatatattatgcat 4360678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Original strand, 18903748 - 18903796
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    ||||||||||| ||||||||||   ||||| ||||||||||||||||||    
T  18903748 gtggtggtcagggtttgaaccccagaccttacatatattatgcattatt 18903796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 19479468 - 19479512
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| | |||||||||| | |||||||||||||||||||||    
T  19479468 tggtggtcggggtttgaaccccggaccttgcatatattatgcatt 19479512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 32268151 - 32268107
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| ||||||||||||  |||||| |||||||||||||||    
T  32268151 tggtggtcggagtttgaaccccaaacctttcatatattatgcatt 32268107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 292
Target Start/End: Complemental strand, 36521532 - 36521496
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  36521532 gtttgaactctgaaccttacatatattatgcattatt 36521496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 44528716 - 44528672
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| ||||| |||| ||||||||||| |||||||||||||    
T  44528716 tggtggtcggagttagaacactgaaccttgcgtatattatgcatt 44528672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 50152240 - 50152272
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcat 288  Q
    |||||||||| ||||||||||||||||||||||    
T  50152240 gtttgaaccccgaaccttgcatatattatgcat 50152272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 14279561 - 14279606
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||| |||||| ||||||||||||| |||||||||    
T  14279561 gtggtggtcagagttcgaaccccgaaccttgcatattttatgcatt 14279606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 33996140 - 33996095
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||    
T  33996140 gtggtggtcggagtttgaaccccgaactttgcatatattatgcatt 33996095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 37141428 - 37141383
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| | |||||||||||| |||||||||||||||||||||||    
T  37141428 gtggtggccggagtttgaaccccgaaccttgcatatattatgcatt 37141383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 293
Target Start/End: Original strand, 39138988 - 39139037
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattatta 293  Q
    ||||||||| |||||||||||| ||||||| ||||| |||||||||||||    
T  39138988 gtggtggtcggagtttgaaccccgaaccttacatattttatgcattatta 39139037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 12061658 - 12061618
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    ||||||||| || ||||||||||||||||||||||||||||    
T  12061658 gtggtggtcggactttgaaccctgaaccttgcatatattat 12061618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 244 - 325
Target Start/End: Original strand, 8999881 - 8999956
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattattagttatcactaccaactgagttaagctcacgag 325  Q
    ||||||||| | |||||||||||| || |||||||||||||||||      || || |||||||||||| ||||||||||||    
T  8999881 gtggtggtcggggtttgaaccctggactttgcatatattatgcat------ttgtctctaccaactgagctaagctcacgag 8999956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 32285796 - 32285762
Alignment:
Q  255 agtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||| |||||||||||||||||||||||    
T  32285796 agtttgaacccggaaccttgcatatattatgcatt 32285762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 296 - 329
Target Start/End: Complemental strand, 1342752 - 1342719
Alignment:
Q  296 tatcactaccaactgagttaagctcacgagaata 329  Q
    |||| |||||||||||||||||||||||||||||    
T  1342752 tatctctaccaactgagttaagctcacgagaata 1342719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 8717477 - 8717510
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||| |||||||||||||||||||||||    
T  8717477 gtttgaaccccgaaccttgcatatattatgcatt 8717510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 8881334 - 8881301
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  8881334 gtttgaaccctggaccttgcatatattatgcatt 8881301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 29908082 - 29908037
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| ||| ||| ||| |||||||||||||||||||||    
T  29908082 gtggtggtcagattttaaactctggaccttgcatatattatgcatt 29908037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 30694429 - 30694474
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| |||||||| ||||| ||||||||||||| |||||||||    
T  30694429 gtggtggccagagtttaaaccccgaaccttgcatattttatgcatt 30694474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 35700385 - 35700430
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||| |||  ||||||||||||||||||    
T  35700385 gtggtggtcggagtttgaaccccgaattttgcatatattatgcatt 35700430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 12714373 - 12714405
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||||||||||||||    
T  12714373 tttgaaccccgaaccttgcatatattatgcatt 12714405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 23159511 - 23159467
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| | |||||||||| ||| |||||||||||||||||||    
T  23159511 tggtggtcggggtttgaaccccgaatcttgcatatattatgcatt 23159467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 26196595 - 26196639
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||| | |||||||||||  |||||||||||||||||||||||    
T  26196595 tggtggccggagtttgaaccacgaaccttgcatatattatgcatt 26196639  T

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Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Original strand, 27718885 - 27718929
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| |||||||||| | | |||||||||||||||||||||    
T  27718885 tggtggtcggagtttgaactccggaccttgcatatattatgcatt 27718929  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 328
Target Start/End: Complemental strand, 38344078 - 38344046
Alignment:
Q  296 tatcactaccaactgagttaagctcacgagaat 328  Q
    |||| ||||||||||||||||||||||||||||    
T  38344078 tatccctaccaactgagttaagctcacgagaat 38344046  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 45727560 - 45727515
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||||||    
T  45727560 gtggtggtcggagtttgaaccctaaaccttgcatacattatgcatt 45727515  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48022304 - 48022349
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||| |||| ||||||||||||||||||    
T  48022304 gtggtggtcggagtttgaaccccgaactttgcatatattatgcatt 48022349  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 21567688 - 21567724
Alignment:
Q  255 agtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||||||||||||||||||||||||||||| |||||    
T  21567688 agtttgaaccctgaaccttgcatatattatgtattat 21567724  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 292
Target Start/End: Original strand, 47099038 - 47099073
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcattatt 292  Q
    ||||||||| ||||||||||||||||||||||||||    
T  47099038 tttgaaccccgaaccttgcatatattatgcattatt 47099073  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 247 - 289
Target Start/End: Complemental strand, 37243292 - 37243250
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||  |||||||||||||||||||||||||||| ||||    
T  37243292 gtggtcaggatttgaaccctgaaccttgcatatattattcatt 37243250  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 290
Target Start/End: Complemental strand, 38603017 - 38602983
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatta 290  Q
    ||||||||| |||||||||||||||||||||||||    
T  38603017 gtttgaaccatgaaccttgcatatattatgcatta 38602983  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 759596 - 759629
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||| ||||||||||||||||||    
T  759596 gtttgaaccctgaactttgcatatattatgcatt 759629  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 4332660 - 4332705
Alignment:
Q  247 gtggtcagagtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    |||||| |||||||||||| | |||||| |||||||||||||||||    
T  4332660 gtggtcggagtttgaaccccggaccttggatatattatgcattatt 4332705  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 7202918 - 7202951
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||||||||||||| |||||||||    
T  7202918 gtttgaaccctgaaccttgcatattttatgcatt 7202951  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 10594736 - 10594703
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||| ||||||||||||||||||||||    
T  10594736 gtttgaaccctaaaccttgcatatattatgcatt 10594703  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 291
Target Start/End: Original strand, 16663232 - 16663273
Alignment:
Q  250 gtcagagtttgaaccctgaaccttgcatatattatgcattat 291  Q
    ||||| |||||||||| | |||||||||||||||||||||||    
T  16663232 gtcagggtttgaaccccggaccttgcatatattatgcattat 16663273  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 16792976 - 16793009
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||| |||||||||||||||||||||    
T  16792976 gtttgaaccctggaccttgcatatattatgcatt 16793009  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 28430555 - 28430600
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||||||||||    |||||||||||||||||||||    
T  28430555 gtggtggtcagagtttgaacctcagaccttgcatatattatgcatt 28430600  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 30554877 - 30554910
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||||||||||||||||||| ||||||||    
T  30554877 gtttgaaccctgaaccttgcatatagtatgcatt 30554910  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 39779083 - 39779050
Alignment:
Q  256 gtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||| |||||||||||||||||||||||    
T  39779083 gtttgaaccccgaaccttgcatatattatgcatt 39779050  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 45334260 - 45334215
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |  ||||||||| |||||||||||||||||||||||    
T  45334260 gtggtggtcgggatttgaaccccgaaccttgcatatattatgcatt 45334215  T

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Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 45432019 - 45431974
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| ||| |||||||||| | |||||||||||||||||||||    
T  45432019 gtggtggccagggtttgaaccccggaccttgcatatattatgcatt 45431974  T

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Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 48944346 - 48944390
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||||| | |||||||||||||||||||    
T  48944346 gtggtggtcggagtttgaaccctg-atcttgcatatattatgcatt 48944390  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Original strand, 54018396 - 54018441
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||| |||  ||||||||||||||||||||||| |||||||||    
T  54018396 gtggtggccaggatttgaaccctgaaccttgcatattttatgcatt 54018441  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 288
Target Start/End: Original strand, 8136622 - 8136666
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcat 288  Q
    ||||||||| | ||||||||| || ||||||||||||||||||||    
T  8136622 gtggtggtcggggtttgaaccttggaccttgcatatattatgcat 8136666  T

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Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Complemental strand, 10926527 - 10926495
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| |||||||||||||||||||||||    
T  10926527 tttgaaccccgaaccttgcatatattatgcatt 10926495  T

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Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 289
Target Start/End: Original strand, 16980357 - 16980389
Alignment:
Q  257 tttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| ||||||||||||||||||||||||    
T  16980357 tttgaaccatgaaccttgcatatattatgcatt 16980389  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 292
Target Start/End: Complemental strand, 31214705 - 31214657
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcattatt 292  Q
    ||||||||| ||||||||| || | ||||| ||||||||||||||||||    
T  31214705 gtggtggtcggagtttgaatcccggaccttacatatattatgcattatt 31214657  T

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Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 33930410 - 33930370
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattat 284  Q
    |||||||||||||||| ||||| | ||||||||||||||||    
T  33930410 gtggtggtcagagtttaaaccccggaccttgcatatattat 33930370  T

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Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 245 - 289
Target Start/End: Complemental strand, 34899167 - 34899123
Alignment:
Q  245 tggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||| | |||||||||| | |||||||||||||||||||||    
T  34899167 tggtggtcggggtttgaaccccggaccttgcatatattatgcatt 34899123  T

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Target: scaffold0028 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 72775 - 72810
Alignment:
Q  254 gagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    |||||||||||||| |||||||||||||||||||||    
T  72775 gagtttgaaccctggaccttgcatatattatgcatt 72810  T

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Target: scaffold0021 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 161212 - 161167
Alignment:
Q  244 gtggtggtcagagtttgaaccctgaaccttgcatatattatgcatt 289  Q
    ||||||||| | |||||||||| ||||||||||||| |||||||||    
T  161212 gtggtggtcggggtttgaaccccgaaccttgcatattttatgcatt 161167  T

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