View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_23 (Length: 422)
Name: NF1240_low_23
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 136 - 366
Target Start/End: Original strand, 732804 - 733045
Alignment:
| Q |
136 |
accaacagaaagcattaatcgactcatgtgccttggatatgtgaacaacaatcatttcatgcagctaaacttatatctgatttttaatttgtatttagtg |
235 |
Q |
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| T |
732804 |
accagcagaaagcattaatcgactcatgtgccttggatatgtgaacaacaatcatttcatgcagctaaacttatatctgatttttaatttgtatttagtg |
732903 |
T |
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| Q |
236 |
ttgtcgttgcttgtgtgtaacaatc--atacctttatattacgtacagatatatctgaatgacgattg---------tcgtacgtgtgtactatgggaaa |
324 |
Q |
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| T |
732904 |
ttgtcgttgcttgtgtgtaacaatcatatacgtttatattacgtacagatatatctgaatgacgattgtccaatacctcctacgtgtgtactatgggaaa |
733003 |
T |
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| Q |
325 |
gacatcgtcaacaggatgcatcagactgggagtttagatatt |
366 |
Q |
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| T |
733004 |
gacatcgtcaacaggatgcatcagactgggagtttagatatt |
733045 |
T |
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Back To:
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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 4109268 - 4109328
Alignment:
| Q |
72 |
cctctgttcatgcatcaatttattgaagaagtcattgatatcgctggtgatggtcattgtg |
132 |
Q |
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| T |
4109268 |
cctctgttcatgcatcaatttattcaaaatgtcgttggtgtcgaaggtgatggtcattgtg |
4109328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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