View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_24 (Length: 413)
Name: NF1240_low_24
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 405
Target Start/End: Original strand, 10412610 - 10413013
Alignment:
| Q |
1 |
taaaaaggcataactaaatgagaaaattaatatttttacttatcattccttttaagacaannnnnnnnacaaatgagtcattcattttgacgcaaagaag |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
10412610 |
taaaaaggcataactgaatgagaaaattaatatttttacttatcattccttttaagacaattttttttacaaatgagtcattcattttgacgcaaagaag |
10412709 |
T |
|
| Q |
101 |
tatttaggcagccataagagtacaaacacttacctaacaattagaatcaatttgtcttacttaatagagtcttaatgattgatattaccaaccaagttgt |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10412710 |
tatttaggtagccataagagtacaaacacttacctaacaattagaatcaatttgtcttacttaatagagtcttaatgattgatattaccaaccaagttgt |
10412809 |
T |
|
| Q |
201 |
accacatacattagagtatagcttgtcaatctgggtctgtctgtactggctgtggtactatatatctatgttcatgaacttggcagattcgagggccaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
10412810 |
accacatacattagagtatagcttgtcaatctgggtctgtctgtactggctgtggtactagatatctatgttcatgaacttggcagattcgagggccaac |
10412909 |
T |
|
| Q |
301 |
tatatgtttcatttgatggcattgcc-tttttatttattgtatatgaaatgatgatgagcatgtacatgtgagccacacaggtgtctcgctgttgttgcc |
399 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10412910 |
--tatgtttcatttgatggcattgccttttttatttattgtatatgaaatgatgatgagcatgtacatgtgagccacacaggtgtctcgctgttgttgcc |
10413007 |
T |
|
| Q |
400 |
tatgct |
405 |
Q |
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| |||| |
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| T |
10413008 |
tttgct |
10413013 |
T |
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