View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1240_low_26 (Length: 401)
Name: NF1240_low_26
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_26 |
 | |
|
| [»] chr4 (5 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 42 - 401
Target Start/End: Original strand, 39578555 - 39578914
Alignment:
| Q |
42 |
atcacaacattctaccatacatagatcttcatataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagaccaacaac |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39578555 |
atcacaacattctaccatacatagatcttcatataatcacttgaaaatgaatactgttttactccattattaatcttacaattgagaacagaccaacaac |
39578654 |
T |
|
| Q |
142 |
cattaactaaggggcgaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgattttc |
241 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39578655 |
cattaactaaggggggaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgattttc |
39578754 |
T |
|
| Q |
242 |
ttcgcatgaaattctgtctagcatcgtcagcgctgcactttcagattcatcaaccctcccagtagacgtgccatccacttcagtcagggtagacagagaa |
341 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39578755 |
ttcgcatgaaattctgtctagcatcgtcagcgctgcactttcagattcatcaaccctcccagtagacgtgccatccactttagtcagggtagacagagaa |
39578854 |
T |
|
| Q |
342 |
ggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctca |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39578855 |
ggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctca |
39578914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 157 - 398
Target Start/End: Original strand, 39542302 - 39542543
Alignment:
| Q |
157 |
gaaacagggacaaaacagagaagtgagctatctacaaaacagttcatggagacacttgcgtgttgattgttgtcccttgattttcttcgcatgaaattct |
256 |
Q |
| |
|
|||||| ||||||||||||||| |||| ||| | ||||||| |||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| |
|
|
| T |
39542302 |
gaaacaaggacaaaacagagaaatgaggtattgaaaaaacagctcatggagacacttgcgtgttgattgttgtaccttgatttgcatcgcatgaaattct |
39542401 |
T |
|
| Q |
257 |
gtctagcatcgtcagcgctgcactttcagattcatcaaccctcccagtagacgtgccatccacttcagtcagggtagacagagaaggtaaacgctgaaca |
356 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
|
|
| T |
39542402 |
gtctagcatcatcagcgctgcactttcagattcatcaaccctcccagtagacgtgccatccacttcagtcagtgcagacagagaaggtaaacgctgaaca |
39542501 |
T |
|
| Q |
357 |
ttaggcaattgaagtgatgcaaaagcactgctagaactatcc |
398 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39542502 |
ttaggcaattgaagtgacgcaaaagcactgctagaactatcc |
39542543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 203 - 401
Target Start/End: Original strand, 39574183 - 39574381
Alignment:
| Q |
203 |
tggagacacttgcgtgttgattgttgtcccttgattttcttcgcatgaaattctgtctagcatcgtcagcgctgcactttcagattcatcaaccctccca |
302 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||| |||||||||||| ||| ||||||||| ||| | |||||||||||||||||||| ||||||| |
|
|
| T |
39574183 |
tggagacatttgcgtgttgattgttgtgccttgatttgcttcgcatgaaagtctatctagcatcatcaatgttgcactttcagattcatcaatcctccca |
39574282 |
T |
|
| Q |
303 |
gtagacgtgccatccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctca |
401 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39574283 |
gtagacgtgccatccacttcagtcggtgtagacagagaaggtaaatgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctca |
39574381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 304 - 401
Target Start/End: Original strand, 39516437 - 39516534
Alignment:
| Q |
304 |
tagacgtgccatccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctca |
401 |
Q |
| |
|
|||||||| ||||| ||||| |||| |||||||||||||| ||||| |||||||||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
39516437 |
tagacgtgtcatccccttcactcagtgtagacagagaaggcaaacggcgaacattaggcaattgaattgatacagaagcactgctagaactatcctca |
39516534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 313 - 401
Target Start/End: Original strand, 39509378 - 39509466
Alignment:
| Q |
313 |
catccacttcagtcagggtagacagagaaggtaaacgctgaacattaggcaattgaagtgatgcaaaagcactgctagaactatcctca |
401 |
Q |
| |
|
||||||||||| |||| ||| ||||||||||||||| ||||||| |||||||||| |||| || |||||||| |||||||||||||| |
|
|
| T |
39509378 |
catccacttcactcagtgtattcagagaaggtaaacggcgaacattgggcaattgaattgatacagaagcactgttagaactatcctca |
39509466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University