View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_27 (Length: 388)
Name: NF1240_low_27
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 23 - 375
Target Start/End: Complemental strand, 44815755 - 44815409
Alignment:
| Q |
23 |
gtattagaattagaatttattgttcatgatcacccaccatttagatctagatccattcattcataatgagtggtagattttgtcttatatataaatcgat |
122 |
Q |
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| T |
44815755 |
gtattagaattagaatttattgttcatgatcacccaccatttagatc------cattcactcataatgagtggtagattttgtcttatatataaatcgat |
44815662 |
T |
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| Q |
123 |
tttgtaaagataatttaatagaacatcgagtgagagaaaaatatttaaccacgatcgaatggaaacataaaacaaagaatcatatcaaacaaaacaaaga |
222 |
Q |
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| T |
44815661 |
tttgtaaagataatttaatagaacatcgagtgagagaaaaatatttaaccacgatcgaatggaaacataaaacaaagaatcatattaaacaaaacaaaga |
44815562 |
T |
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| Q |
223 |
atcatattaagaacctttgtaactatcttcaatattgaaattagccttcaaaatttgaatcacagagattctctaaggaaaacaattaattattgtaccc |
322 |
Q |
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| T |
44815561 |
atcatattaagaacctttgtaactatcttcaatattgaaattagccttcaaaatttgaatcacagagattctctaaggaaaacaattaattattgtaccc |
44815462 |
T |
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| Q |
323 |
cgatgtcatgctaatgcgagaacaaattgaatggaggatgatctgtatgcttc |
375 |
Q |
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| T |
44815461 |
cgatgtcatgctaatgcgagaacaaattgaatggaggatgatctatatgcttc |
44815409 |
T |
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