View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1240_low_28 (Length: 386)

Name: NF1240_low_28
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1240_low_28
NF1240_low_28
[»] chr4 (37 HSPs)
chr4 (10-196)||(7773398-7773584)
chr4 (10-196)||(7771697-7771883)
chr4 (10-196)||(7790382-7790568)
chr4 (10-148)||(7878733-7878871)
chr4 (10-156)||(7908644-7908790)
chr4 (10-190)||(7237316-7237496)
chr4 (204-291)||(837674-837761)
chr4 (76-196)||(7765944-7766064)
chr4 (60-196)||(45365843-45365979)
chr4 (61-196)||(48156053-48156188)
chr4 (60-147)||(49043791-49043878)
chr4 (67-137)||(7813838-7813908)
chr4 (73-146)||(48853033-48853106)
chr4 (76-196)||(7786766-7786886)
chr4 (67-137)||(7800998-7801068)
chr4 (76-144)||(45371713-45371781)
chr4 (67-138)||(48864395-48864466)
chr4 (82-139)||(48147358-48147415)
chr4 (77-138)||(49038518-49038579)
chr4 (79-196)||(50666617-50666734)
chr4 (61-196)||(48870862-48870997)
chr4 (61-196)||(48876166-48876301)
chr4 (61-196)||(48886548-48886683)
chr4 (66-140)||(45384521-45384595)
chr4 (209-290)||(829656-829737)
chr4 (79-196)||(37826632-37826749)
chr4 (67-135)||(7823332-7823400)
chr4 (87-137)||(48903316-48903366)
chr4 (60-146)||(49048178-49048264)
chr4 (60-152)||(48899086-48899178)
chr4 (64-138)||(48863625-48863699)
chr4 (89-146)||(48861640-48861697)
chr4 (66-137)||(47208238-47208309)
chr4 (66-124)||(48735040-48735098)
chr4 (60-143)||(49040775-49040858)
chr4 (89-136)||(50672860-50672907)
chr4 (92-127)||(48734174-48734209)
[»] chr5 (6 HSPs)
chr5 (79-190)||(9120071-9120182)
chr5 (94-190)||(179366-179462)
chr5 (14-148)||(29688479-29688613)
chr5 (76-138)||(42561972-42562034)
chr5 (66-148)||(29712070-29712152)
chr5 (66-134)||(29696600-29696668)
[»] chr3 (4 HSPs)
chr3 (61-141)||(11015115-11015195)
chr3 (60-196)||(47451523-47451659)
chr3 (67-137)||(11024133-11024203)
chr3 (80-146)||(11005571-11005637)
[»] chr7 (3 HSPs)
chr7 (76-146)||(48884176-48884246)
chr7 (91-142)||(30130916-30130967)
chr7 (81-142)||(30165853-30165914)
[»] chr6 (3 HSPs)
chr6 (82-145)||(21016174-21016237)
chr6 (76-134)||(21979267-21979325)
chr6 (91-131)||(14197337-14197377)
[»] chr1 (7 HSPs)
chr1 (77-132)||(24367531-24367586)
chr1 (77-144)||(24416132-24416199)
chr1 (79-144)||(24310570-24310635)
chr1 (76-129)||(24323139-24323192)
chr1 (76-144)||(24340765-24340833)
chr1 (76-144)||(24353130-24353198)
chr1 (76-139)||(24369800-24369863)
[»] chr8 (7 HSPs)
chr8 (89-139)||(4031578-4031628)
chr8 (76-196)||(15349185-15349305)
chr8 (98-196)||(4962180-4962278)
chr8 (80-141)||(12195681-12195742)
chr8 (80-141)||(12440109-12440170)
chr8 (80-196)||(12200644-12200760)
chr8 (80-196)||(12445072-12445188)


Alignment Details
Target: chr4 (Bit Score: 159; Significance: 1e-84; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 10 - 196
Target Start/End: Original strand, 7773398 - 7773584
Alignment:
Q  10 aataatatcaccattttttgtagaatatataggtcgaaagtagtggtcacgaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcact 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||||||||||| |||| |||||||||||||||||    
T  7773398 aataatatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcttcaacagaaagaacaagagatttaatccaagacgaatgcact 7773497  T
Q  110 ttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaa 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7773498 ttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacccacaaa 7773584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 7771883 - 7771697
Alignment:
Q  10 aataatatcaccattttttgtagaatatataggtcgaaagtagtggtcacgaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcact 109  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  7771883 aataatatcaccattttttgtagaatatataggttgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttagtccatgacgaatgcact 7771784  T
Q  110 ttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaa 196  Q
    |||||||||||||||||||||||| ||| |||||||||| ||| ||||||||| |||| ||| ||| |||||||||||||| |||||    
T  7771783 ttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgagaaattctccaaatacccacaaa 7771697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 7790568 - 7790382
Alignment:
Q  10 aataatatcaccattttttgtagaatatataggtcgaaagtagtggtcacgaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcact 109  Q
    |||||||||||||| ||||||||||||||||||| |||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  7790568 aataatatcaccatattttgtagaatatataggttgaaagtagtgatcaggaatggcatcaatagaaagaacaagagttttagtccaagacgaatgcact 7790469  T
Q  110 ttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaa 196  Q
    |||||||||||||||||||||||||||| |||||||||| ||| ||||||||| |||| ||| ||| |||||||||||||| |||||    
T  7790468 ttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgcataaactgagaaattctccaaatacccacaaa 7790382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 7878871 - 7878733
Alignment:
Q  10 aataatatcaccattttttgtagaatatataggtcgaaagtagtggtcacgaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcact 109  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| ||| ||||| ||||||| |||||||||||||||||| ||||||| |||||||||    
T  7878871 aataatatcaccattttctgtagaatatataggttgaaagtagtgatcaggaatgacatcaaccgaaagaacaagagttttaatccaagatgaatgcact 7878772  T
Q  110 ttgtattctttcatcacccatatttcaactgtatcatta 148  Q
    |||||||||||||||||||||||||||||||||||||||    
T  7878771 ttgtattctttcatcacccatatttcaactgtatcatta 7878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 7908790 - 7908644
Alignment:
Q  10 aataatatcaccattttttgtagaatatataggtcgaaagtagtggtcacgaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcact 109  Q
    |||||||||||| ||||||||||| | ||||||  |||||||||| ||| |||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  7908790 aataatatcaccgttttttgtagagtgtatagggtgaaagtagtgatcaggaatggcatcaacagaaagaacaagagttttattccaagatgaatgcact 7908691  T
Q  110 ttgtattctttcatcacccatatttcaactgtatcattagcattatc 156  Q
    |||||||||||||||||||||||||||| |||||| ||| |||||||    
T  7908690 ttgtattctttcatcacccatatttcaagtgtatctttatcattatc 7908644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 7237316 - 7237496
Alignment:
Q  10 aataatatcaccattttttgtagaatatataggtcgaaagtagtggtcacgaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcact 109  Q
    |||||||||||||||||||||||| | ||||||  ||||||||||  || |||||  || || || ||| |||||||||||||||||| ||||||||| |    
T  7237316 aataatatcaccattttttgtagagtgtatagggtgaaagtagtgaccaggaatgcgatgaagaggaagcacaagagttttagtccaaaacgaatgcatt 7237415  T
Q  110 ttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacc 190  Q
    |||||||||||||||||||||||| ||| |||||||||| ||| ||||| |||||||| ||| ||| ||||||||||||||    
T  7237416 ttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacc 7237496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 204 - 291
Target Start/End: Original strand, 837674 - 837761
Alignment:
Q  204 ctgttgctgcctcgggtttttgttaaggagcggttctatcagccatcacttgtgcgtttaatgggctgcatttgcttttgtcattatt 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  837674 ctgttgctgcctcgggtttttgttaaggagcggttctatcagccatcacttgtgcatttaatgggctgcatttgcttttgtcattatt 837761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 7766064 - 7765944
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaaga 175  Q
    ||||||||| || |||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||| ||| |||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7765965  T
Q  176 tattctccaaataccgacaaa 196  Q
     |||||||| ||||| |||||    
T  7765964 aattctccagatacccacaaa 7765944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 45365843 - 45365979
Alignment:
Q  60 gaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcctt 159  Q
    ||||| |||||| || ||||||  |||| || |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |    
T  45365843 gaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcactttatattctttcatcacccatatttcaactgtatcattatcataatccat 45365942  T
Q  160 agcccatacactaagatattctccaaataccgacaaa 196  Q
    |||||| | ||| | | |||||||||||||| |||||    
T  45365943 agcccaaaaactgaaaaattctccaaatacccacaaa 45365979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 61 - 196
Target Start/End: Original strand, 48156053 - 48156188
Alignment:
Q  61 aatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcctta 160  Q
    |||| |||||| || ||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||| | ||||||||   |||   |    
T  48156053 aatgccatcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattagcccaatcaaca 48156152  T
Q  161 gcccatacactaagatattctccaaataccgacaaa 196  Q
    ||||||| ||| ||| |||||||||||||| |||||    
T  48156153 gcccataaactgagaaattctccaaatacccacaaa 48156188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 49043791 - 49043878
Alignment:
Q  60 gaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatt 147  Q
    ||||| |||||| ||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  49043791 gaatgacatcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcatt 49043878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 7813908 - 7813838
Alignment:
Q  67 atcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  7813908 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 48853106 - 48853033
Alignment:
Q  73 agaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 146  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  48853106 agaaagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 48853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 7786886 - 7786766
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaaga 175  Q
    |||||||||||| ||| |||||||  ||||||| |||||||||||||||||||||||||||| ||||||||||| | |||||||| |||||| ||| |||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattagtagtatccttaacccatatactgaga 7786787  T
Q  176 tattctccaaataccgacaaa 196  Q
     |||| ||| ||||| |||||    
T  7786786 aattccccagatacccacaaa 7786766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 7801068 - 7800998
Alignment:
Q  67 atcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||||||||||||||    
T  7801068 atcaacagaaagaacaagagttttattccaagacgaatgcactttgtaatctttcaacacccatatttcaa 7800998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 76 - 144
Target Start/End: Original strand, 45371713 - 45371781
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 144  Q
    |||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  45371713 aagaacaaaagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaactgtatc 45371781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 67 - 138
Target Start/End: Complemental strand, 48864466 - 48864395
Alignment:
Q  67 atcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 138  Q
    ||||| || |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 48864395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 48147358 - 48147415
Alignment:
Q  82 aagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 139  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 48147415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 77 - 138
Target Start/End: Original strand, 49038518 - 49038579
Alignment:
Q  77 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 138  Q
    ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaac 49038579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 79 - 196
Target Start/End: Complemental strand, 50666734 - 50666617
Alignment:
Q  79 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatat 178  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||||||  ||| |||  ||||| ||| | ||||| |     
T  50666734 aacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcattcacataatcaatagccgataaattaagaaac 50666635  T
Q  179 tctccaaataccgacaaa 196  Q
    |||| ||||||| |||||    
T  50666634 tctctaaatacccacaaa 50666617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 48870997 - 48870862
Alignment:
Q  61 aatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcctta 160  Q
    |||| |||||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||| ||||||| ||||| || |  || |||| ||    
T  48870997 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48870898  T
Q  161 gcccatacactaagatattctccaaataccgacaaa 196  Q
    ||  ||| ||| ||| |||| ||||||||| |||||    
T  48870897 gcatatagactgagaaattccccaaatacccacaaa 48870862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 48876301 - 48876166
Alignment:
Q  61 aatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcctta 160  Q
    |||| |||||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||| ||||||| ||||| || |  || |||| ||    
T  48876301 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48876202  T
Q  161 gcccatacactaagatattctccaaataccgacaaa 196  Q
    ||  ||| ||| ||| |||| ||||||||| |||||    
T  48876201 gcatatagactgagaaattccccaaatacccacaaa 48876166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 61 - 196
Target Start/End: Complemental strand, 48886683 - 48886548
Alignment:
Q  61 aatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcctta 160  Q
    |||| |||||||||||||||||||||| || ||||||||||| | |||||||||||| ||||||||||| ||||||| ||||| || |  || |||| ||    
T  48886683 aatgtcatcaacagaaagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccata 48886584  T
Q  161 gcccatacactaagatattctccaaataccgacaaa 196  Q
    ||  ||| ||| ||| |||| ||||||||| |||||    
T  48886583 gcatatagactgagaaattccccaaatacccacaaa 48886548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 45384521 - 45384595
Alignment:
Q  66 catcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactg 140  Q
    |||||| || ||||||| |||| || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  45384521 catcaaaaggaagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaactg 45384595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 209 - 290
Target Start/End: Complemental strand, 829737 - 829656
Alignment:
Q  209 gctgcctcgggtttttgttaaggagcggttctatcagccatcacttgtgcgtttaatgggctgcatttgcttttgtcattat 290  Q
    |||||||| ||||||||||||||||  |||||||| ||||||||||||| |||| |||| ||| ||||||||||||||||||    
T  829737 gctgcctcaggtttttgttaaggagttgttctatcggccatcacttgtgggtttgatggactgtatttgcttttgtcattat 829656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 37826632 - 37826749
Alignment:
Q  79 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatat 178  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| || || || ||||| ||||  | |  || | ||||||| ||||||| ||    
T  37826632 aacaagagtcttagtccaagacgaatgcagtttgtattctttcatcacccgtaatttaagtgtatgattataactgcccatggcccatagactaagaaat 37826731  T
Q  179 tctccaaataccgacaaa 196  Q
    |||||||||||| |||||    
T  37826732 tctccaaatacccacaaa 37826749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 7823400 - 7823332
Alignment:
Q  67 atcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttc 135  Q
    ||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| | ||||||||||||    
T  7823400 atcaacagaaagaacaagagttttattccaagacaaatgcactttgtaatctttaaacacccatatttc 7823332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 87 - 137
Target Start/End: Complemental strand, 48903366 - 48903316
Alignment:
Q  87 ttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48903366 ttttagtccaagacaaatgcactttgtattctttcatcacccatatttcaa 48903316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 60 - 146
Target Start/End: Original strand, 49048178 - 49048264
Alignment:
Q  60 gaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 146  Q
    ||||| |||||  ||||| ||||| ||| |||||||| |||||||||||||| || |||||||||||||||||||||||| ||||||    
T  49048178 gaatgacatcagtagaaaaaacaaaagtcttagtccatgacgaatgcactttatactctttcatcacccatatttcaactatatcat 49048264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 152
Target Start/End: Complemental strand, 48899178 - 48899086
Alignment:
Q  60 gaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcat 152  Q
    ||||| |||||| || ||||||||||||    |||||||| || |  ||||| ||||||||||||||||||||||||||||||||||||||||    
T  48899178 gaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctttcatcacccatatttcaactgtatcattagcat 48899086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 138
Target Start/End: Complemental strand, 48863699 - 48863625
Alignment:
Q  64 ggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 138  Q
    |||||||| |||||| |||||||||||| ||||||| |||||||||  |||||||| |||||||||||| |||||    
T  48863699 ggcatcaatagaaagcacaagagttttaatccaagatgaatgcactccgtattcttccatcacccatatgtcaac 48863625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 89 - 146
Target Start/End: Complemental strand, 48861697 - 48861640
Alignment:
Q  89 ttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 146  Q
    |||||||||||| ||||||||||||||||||| || ||||||||||||| ||||||||    
T  48861697 ttagtccaagacaaatgcactttgtattcttttattacccatatttcaaatgtatcat 48861640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 137
Target Start/End: Complemental strand, 47208309 - 47208238
Alignment:
Q  66 catcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 137  Q
    |||||| |||||||| ||||  |||||||||||| || || |||||||||||||||||||||| ||||||||    
T  47208309 catcaagagaaagaataagaactttagtccaagatgattgtactttgtattctttcatcacccttatttcaa 47208238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 48735040 - 48735098
Alignment:
Q  66 catcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatc 124  Q
    |||||||||| | | || ||||||||||||||||||||| |||||||||||||||||||    
T  48735040 catcaacagacacagcatgagttttagtccaagacgaattcactttgtattctttcatc 48735098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 49040775 - 49040858
Alignment:
Q  60 gaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtat 143  Q
    |||||||||||| || ||| |||||| ||||| ||||||| |||||||||   ||||||| |||||||||||| ||||| ||||    
T  49040775 gaatggcatcaataggaagcacaagaattttaatccaagatgaatgcactccatattcttccatcacccatatatcaaccgtat 49040858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 89 - 136
Target Start/End: Complemental strand, 50672907 - 50672860
Alignment:
Q  89 ttagtccaagacgaatgcactttgtattctttcatcacccatatttca 136  Q
    |||||||| |||||||||| |||||||| |||||||||||||||||||    
T  50672907 ttagtccacgacgaatgcaatttgtattgtttcatcacccatatttca 50672860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 48734209 - 48734174
Alignment:
Q  92 gtccaagacgaatgcactttgtattctttcatcacc 127  Q
    |||||| |||||||||||||||||||||||||||||    
T  48734209 gtccaatacgaatgcactttgtattctttcatcacc 48734174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 79 - 190
Target Start/End: Complemental strand, 9120182 - 9120071
Alignment:
Q  79 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatat 178  Q
    ||||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||| ||| ||| ||    
T  9120182 aacaagagttttcttccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaat 9120083  T
Q  179 tctccaaatacc 190  Q
    ||||||||||||    
T  9120082 tctccaaatacc 9120071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 94 - 190
Target Start/End: Complemental strand, 179462 - 179366
Alignment:
Q  94 ccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaatacc 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||| ||| ||| ||| ||||||||||    
T  179462 ccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcattatcataatccatagcccatatactgagaaattgtccaaatacc 179366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 29688613 - 29688479
Alignment:
Q  14 atatcaccattttttgtagaatatataggtcgaaagtagtggtcacgaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgt 113  Q
    ||||||||| |||||||| ||||| | || | |||||||||     ||||| || ||| ||||||||| ||||| || ||||||||||| ||||| ||||    
T  29688613 atatcaccactttttgtacaatatttcggacaaaagtagtgaatgggaatgtcaccaaaagaaagaacgagagtctttgtccaagacgattgcacattgt 29688514  T
Q  114 attctttcatcacccatatttcaactgtatcatta 148  Q
    ||| ||||||||||||||||||||||||| |||||    
T  29688513 attttttcatcacccatatttcaactgtaccatta 29688479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 76 - 138
Target Start/End: Original strand, 42561972 - 42562034
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaac 138  Q
    |||||||||| | ||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaac 42562034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 148
Target Start/End: Original strand, 29712070 - 29712152
Alignment:
Q  66 catcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcatta 148  Q
    |||||| ||| | ||||||||| ||||||||||| ||   ||| ||||||| || |||||||||||||||||||||| |||||    
T  29712070 catcaaaagacaaaacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaactgtaccatta 29712152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 29696668 - 29696600
Alignment:
Q  66 catcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatattt 134  Q
    |||||| ||| || |||||||| ||||||||||| || ||||| ||||||| || ||||||||||||||    
T  29696668 catcaaaagacaggacaagagtcttagtccaagaggattgcacattgtatttttccatcacccatattt 29696600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 61 - 141
Target Start/End: Original strand, 11015115 - 11015195
Alignment:
Q  61 aatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgt 141  Q
    |||| |||||| ||| || ||||||||||||  |||||||||||||||||||||||||||||| |||||||||||||||||    
T  11015115 aatgtcatcaatagataggacaagagttttaacccaagacgaatgcactttgtattctttcataacccatatttcaactgt 11015195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 60 - 196
Target Start/End: Original strand, 47451523 - 47451659
Alignment:
Q  60 gaatggcatcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatcctt 159  Q
    ||||| |||||| || |||||||||||| ||   |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||  |  ||||      
T  47451523 gaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaactatatcattatgacaatccag 47451622  T
Q  160 agcccatacactaagatattctccaaataccgacaaa 196  Q
    | ||| || ||||||| |||||||||||||| |||||    
T  47451623 aacccttagactaagaaattctccaaatacccacaaa 47451659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 11024133 - 11024203
Alignment:
Q  67 atcaacagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 137  Q
    ||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  11024133 atcaatagataggacaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 11005571 - 11005637
Alignment:
Q  80 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 146  Q
    |||||||  ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||    
T  11005571 acaagagccttagtccaagacgaatgcactttgtattctttcataacccatatttcaattgtttcat 11005637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcat 146  Q
    |||||||||||| ||||||||||||  ||||||||||||||||||||||||| ||||||||||| ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 30130916 - 30130967
Alignment:
Q  91 agtccaagacgaatgcactttgtattctttcatcacccatatttcaactgta 142  Q
    ||||||||| ||||||||| ||||||||| |||||||||||| | |||||||    
T  30130916 agtccaagatgaatgcactgtgtattcttgcatcacccatatcttaactgta 30130967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 142
Target Start/End: Complemental strand, 30165914 - 30165853
Alignment:
Q  81 caagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgta 142  Q
    |||||||  |||||||||| |||||||||  |||||||| |||||||||||| | |||||||    
T  30165914 caagagtcgtagtccaagatgaatgcactgcgtattcttgcatcacccatatcttaactgta 30165853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 82 - 145
Target Start/End: Complemental strand, 21016237 - 21016174
Alignment:
Q  82 aagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatca 145  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||    
T  21016237 aagagtcttagtccaagacgaatgtactttgtattctttcataacccatatttcaactatatca 21016174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 21979267 - 21979325
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatattt 134  Q
    |||||||||  | ||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  21979267 aagaacaagtttcttattccaagaggaacgcactttgtattctttcatcacccatattt 21979325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 14197337 - 14197377
Alignment:
Q  91 agtccaagacgaatgcactttgtattctttcatcacccata 131  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  14197337 agtccaagatgaatgcattttgtattctttcatcacccata 14197377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 24367586 - 24367531
Alignment:
Q  77 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatat 132  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  24367586 agaacaagagttttagtccaagacgaatgcactttgtattcttccattacccatat 24367531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 24416199 - 24416132
Alignment:
Q  77 agaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 144  Q
    ||||||||||||||||||||||| || ||| ||||||||||||||||||||||||| |||||| ||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatc 24416132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 79 - 144
Target Start/End: Complemental strand, 24310635 - 24310570
Alignment:
Q  79 aacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 144  Q
    ||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||| ||||    
T  24310635 aacaagagttttactccaagaagactgcactttgtattctttcatcacccatatatcaactttatc 24310570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 76 - 129
Target Start/End: Complemental strand, 24323192 - 24323139
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcaccca 129  Q
    ||||||||||||||||||| |||| || ||||||||||||||||||||||||||    
T  24323192 aagaacaagagttttagtcgaagatgactgcactttgtattctttcatcaccca 24323139  T

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Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 24340833 - 24340765
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 144  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||    
T  24340833 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatc 24340765  T

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Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 24353198 - 24353130
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatc 144  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| ||||| || ||||| |||||    
T  24353198 aagaacaagagttttagtccaagatgactgcactttatattctttcattacccagatatcaaccgtatc 24353130  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 139
Target Start/End: Complemental strand, 24369863 - 24369800
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 139  Q
    |||||||||||||||||||||||| |||||||||   || | || |||||||||||| ||||||    
T  24369863 aagaacaagagttttagtccaagatgaatgcactccatactattccatcacccatatatcaact 24369800  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 139
Target Start/End: Original strand, 4031578 - 4031628
Alignment:
Q  89 ttagtccaagacgaatgcactttgtattctttcatcacccatatttcaact 139  Q
    ||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4031578 ttagtccaagacgaatgcattttgtattctttcataacccatatttcaact 4031628  T

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Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 76 - 196
Target Start/End: Complemental strand, 15349305 - 15349185
Alignment:
Q  76 aagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaaga 175  Q
    |||||||||| | || |||||||| || | ||||||||||||||||||||||||||||||||   ||||||||| || |||| ||| ||| | ||||| |    
T  15349305 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaa 15349206  T
Q  176 tattctccaaataccgacaaa 196  Q
     |||| ||||| ||| |||||    
T  15349205 aattcgccaaagacccacaaa 15349185  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 196
Target Start/End: Original strand, 4962180 - 4962278
Alignment:
Q  98 gacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccgacaaa 196  Q
    |||||||||| ||||||||||||||||||||||||||||||| ||  |||   || |||| |  |||||| ||| ||| |||||||||||||| |||||    
T  4962180 gacgaatgcagtttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaa 4962278  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12195742 - 12195681
Alignment:
Q  80 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgt 141  Q
    |||||||| ||||||||||| || ||   |||||||||||||||| ||||||||||||||||    
T  12195742 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgt 12195681  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 141
Target Start/End: Complemental strand, 12440170 - 12440109
Alignment:
Q  80 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgt 141  Q
    |||||||| ||||||||||| || ||   |||||||||||||||| ||||||||||||||||    
T  12440170 acaagagtcttagtccaagatgattgttgtttgtattctttcatctcccatatttcaactgt 12440109  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 12200760 - 12200644
Alignment:
Q  80 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatatt 179  Q
    |||||||| || |||||||||||| ||| |||||||  ||||||| ||||||||||||  || | |||| ||  || | ||  ||||| ||||||| |||    
T  12200760 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaatt 12200661  T
Q  180 ctccaaataccgacaaa 196  Q
    ||||||||||| |||||    
T  12200660 ctccaaatacccacaaa 12200644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 196
Target Start/End: Complemental strand, 12445188 - 12445072
Alignment:
Q  80 acaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatatt 179  Q
    |||||||| || |||||||||||| ||| |||||||  ||||||| ||||||||||||  || | |||| ||  || | ||  ||||| ||||||| |||    
T  12445188 acaagagtcttggtccaagacgaacgcagtttgtatattttcatcgcccatatttcaagcgtctgattatcaaaattcatattccatagactaagaaatt 12445089  T
Q  180 ctccaaataccgacaaa 196  Q
    ||||||||||| |||||    
T  12445088 ctccaaatacccacaaa 12445072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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