View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1240_low_31 (Length: 379)
Name: NF1240_low_31
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 158 - 355
Target Start/End: Original strand, 43744632 - 43744829
Alignment:
| Q |
158 |
gttataaaagggtggtgaggatacattattatacttcataggtttgaccattccaatccctacggcatacatgcaaattgaatagttttagggaccctaa |
257 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43744632 |
gttataaaagggtggtgaggatacattattatacttcataggtttgaccattccaatccctacggcatacatgcaaattgaatagttttagggaccctaa |
43744731 |
T |
|
| Q |
258 |
ataatgcccacctcatagcataaaatttaaaataatcagatttgtcaaatcttaataaagtaattagccgatcaataatcttgagaaagagtgcgtat |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43744732 |
ataatgcccacctcatagcataaaatttaaaataatcagatttgtcaaatcttaataaagtaattagccgatcaataatcttgagaaagagtgcgtat |
43744829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 43744059 - 43744226
Alignment:
| Q |
1 |
actttgaccgtaccacattcatcttctgtgtttggattcaatatatgccgcaaaacgctgaaaatagagttactttgctgactgtaacgggaagctttct |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43744059 |
actttgaccataccacattcatcttctgtgtttggattcaatatatgccgcaaaacgctgaaaatagagttactttgctgactgtaacgggaagctttct |
43744158 |
T |
|
| Q |
101 |
cattcaattaaaaaatggaaagaattggaatcctaattaattgaaaatgataaacgggttataaaagg |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43744159 |
cattcaattaaaaaatggaaagaattggaatcctaattaattgaaaatgataaacgggttataaaagg |
43744226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University