View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1240_low_32 (Length: 377)
Name: NF1240_low_32
Description: NF1240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1240_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 156; Significance: 8e-83; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 89 - 256
Target Start/End: Complemental strand, 16962083 - 16961916
Alignment:
| Q |
89 |
aagaaacaaagggaaatgctgaagtggcaacaaagaatggcaatcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggca |
188 |
Q |
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| T |
16962083 |
aagagacaaagggaaatgctgaagtggcaacaaagaatggcaatcatcataggcattgctagaggaattcaattcttacatacaggagttaatcctggca |
16961984 |
T |
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| Q |
189 |
tatatggaaacaacattaagattgagaacattttgttggacaataatctcaatccaaaagttagtgga |
256 |
Q |
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| T |
16961983 |
tatatggaaacaacataaagattgagaacattttgttggacaataatctcaatccaaaagttagtgga |
16961916 |
T |
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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 104 - 256
Target Start/End: Original strand, 24827655 - 24827807
Alignment:
| Q |
104 |
atgctgaagtggcaacaaagaatggcaatcatcataggcattgctagaggaattcaattcctacatacaggagttaatcctggcatatatggaaacaaca |
203 |
Q |
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| T |
24827655 |
atgctaaaatggccacaaagaatggcaatcagcataggaattgcaagaggagttcagttcttacatacaggagttgctcctggaatatttggcaacaatt |
24827754 |
T |
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| Q |
204 |
ttaagattgagaacattttgttggacaataatctcaatccaaaagttagtgga |
256 |
Q |
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| T |
24827755 |
tcaagattgagaatattttgttagatgatagtcttaatgcaaaagttagtgga |
24827807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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